Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03011 ATGGAGAAATCAAGGCCTTCAGACCAAGTTGTTCTCTTCATCGACCAACATAATCCTAAGCCATCATCCATGGAAGCCGAAAACCATCAAGAGAAACCCAGACACCCCATAAAAGTAAAAACTCTTAACCGTCTCAGCTTCTCAAAACCCAAATCCCGAATCCAAGAGTTCAACCATGTTCCCCGCAACAAGCTCGCAGCCTCTGAAGAAGAAGATGACATTATCCAACCCACGTACAAGCTCACTTCCAATGAAGAAGACGACGACGAAGATGACTGGAAATGGGACAAGGAAGACATGGAAGAGGATGGCTCAGAGCATAACACGAAGTTGCACCAAAAGAAGAAGTTCAAAGTGAAGTGGAGGCTCGTGATGGAGTGGGCTTTGTTCCTCAATATATTGGCATGCTTGGTGTGTTCTTTGACAATTTCTTCCATAACCAACATGCACGTCCTGGGATTGGAGATTTGGAGGTGGTGTGTCATGGTAATGGTTACATTCAGTGGTCGCCTGGTTTCAGGGTGGCTAGTTGGTGTGATCGTGTTCTTCCTTGAACGAAACTTCATGCTAAGGGATAAGGTGTTGTACTTCATCTACGGGCTTAGAAAAAGCATAAGAAACTGTTTGTGGTTAGGCCTGGTGTTACTCTCGTACTGGAGCTTGGTATTCGACGATGTGCAGAAGAAGAACCACAAGTTTCTGAACAAGATGTTTCAGGCGCTGGTGGCAGTTCTGGTGGGCGCAACCATTTGGCTGGTGAAGATCGTACTGGTGAAGATGCTGGCGTCGTCGTTCCACGTGACGACGTACTTTGACAGAATGAAGGAGAGCGTTTTCCACCACTACATTTTGGATACTTTGTCGGGTCCGGCGATGGAGGACGCGGAGGAGATATTGCGGCAGCACCAGCTGATGGGGTCGAAGTCGATGCCTGCGAGGTTGAAGATGAAGGAGGCGAAGAACTCGTACAAGTCGAAGAGATTTGGGTCGAGGAAGATCGACATGGAGAAGCTGAGAGAGCTCAGCATGGAGAGCCCTTCGTCTGCATGGAGTGTGAAGAGACTTGTTAACTATGTCAGATCTTCTGGCTTGTCCACCATTTCCAGAACCGTCGATGATTTTGGCAATGCTGAGTCTGAGATCAATAGCGAGTGGGAAGCTAGAAACTGTGCTCAGAGGATTTTCAAGAACGTTGCCAAACCTGGTGCCAAGTATATTGAGGAGGAAGATCTGATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACAGGACAGATAAGCAGGTCTTCATTCAGAAATTGGGTGATTCGAGCATATTATGAACGAAAAGCCCTAGCACAGTCACTGAACGATACGAAAACAGCAGTGCAACAGCTTCACAAAATAGCAAGTGCAATTGTTAGTGTCATAATAATCATTGTGATGCTTTTGGTGATGGAGGTGGCCACACTCAAGATAATTTTGTTCTGCATCACACAAACAGTTCTCATAGGTGTTGCCTTCCAAGGTACCTGCAAGACTGTGTTGGAAGCCATTATCTTTGTCTTTGTCATGCACCCTTTTGATATTGGAGATCGATGCGTCATTGATGGAGTTCATATGATCGTGGAAGAGATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAGAAAATTTACTACCCTAATGCAGTTTTGCTCTCTAAGCCAATAAGCAACTTCTATAGGAGTCCAGAGATGGGTGATGCAGTTGATTTCACCATCGATGTTTCAACTTCCATGGAGACCATCCTTGCCCTCAAGAAATCTATACAGATGTACATTGAGAGCAAACCCAAGTATTGGAATCCAAAATACAGTTTGATAGCAAAAGGAATTGAGAATGTGGACAAGCTAAAGTTTGCCCTATGTGTGCAACACACTATCAACCATCAGAACTATGGTGAGAGAAACGTTAGGATGACTGAGCTTCTCTTGGAACTGAAGAGGATCTTTGAGATCCATGGTGTGAAGTATCATCTTCTTCCTCAGGAGATTCAGATCACCCATATGAATATTGAACATGGCAAAGTTCTGTTTCAATCATGA 2103 0.4456 MEKSRPSDQVVLFIDQHNPKPSSMEAENHQEKPRHPIKVKTLNRLSFSKPKSRIQEFNHVPRNKLAASEEEDDIIQPTYKLTSNEEDDDEDDWKWDKEDMEEDGSEHNTKLHQKKKFKVKWRLVMEWALFLNILACLVCSLTISSITNMHVLGLEIWRWCVMVMVTFSGRLVSGWLVGVIVFFLERNFMLRDKVLYFIYGLRKSIRNCLWLGLVLLSYWSLVFDDVQKKNHKFLNKMFQALVAVLVGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYILDTLSGPAMEDAEEILRQHQLMGSKSMPARLKMKEAKNSYKSKRFGSRKIDMEKLRELSMESPSSAWSVKRLVNYVRSSGLSTISRTVDDFGNAESEINSEWEARNCAQRIFKNVAKPGAKYIEEEDLMRFLKRVEIHTIFPLFEGALETGQISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKIASAIVSVIIIIVMLLVMEVATLKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFVMHPFDIGDRCVIDGVHMIVEEMNILTTVFLRYDNEKIYYPNAVLLSKPISNFYRSPEMGDAVDFTIDVSTSMETILALKKSIQMYIESKPKYWNPKYSLIAKGIENVDKLKFALCVQHTINHQNYGERNVRMTELLLELKRIFEIHGVKYHLLPQEIQITHMNIEHGKVLFQS 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03011 700 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g03011 700 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 30 690 IPR016688 -
Viun3g03011 700 FunFam Predicted mechanosensitive ion channel 530 579 - -
Viun3g03011 700 Gene3D - 530 579 IPR023408 -
Viun3g03011 700 Pfam Mechanosensitive ion channel 471 676 IPR006685 GO:0016020|GO:0055085
Viun3g03011 700 MobiDBLite consensus disorder prediction 22 37 - -
Viun3g03011 700 SUPERFAMILY Sm-like ribonucleoproteins 521 579 IPR010920 -
Viun3g03011 700 PIRSF Memb_At2g17000 15 698 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03011 Viun-Chr3 36513246 36518388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03011 6 690 Mechanosensitive Ion Channel Family AT5G12080 43.972 0.0 564
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03011 K22048 - gmx:100813521 1210.28