Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g03006 ATGTTTACGTGTATAGCGTGTACGAAGCAAACGACGGATGAGAGGGAGGAAGAAGGAGGAGTCCGTGAGAGTGGCACGCCGAGTACAAAAGAAGCTGTCAAAAGCCTGACCACACAGATAAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAACAATGCAAACCCTGCACAGGGTCCAGTAACTACAAGAAAGGACATAGACCATATCCAGACTTCGATACCATCTCAGAAGGGGTTCCATACCCTTACATTGGGGGTGCAAGCTCAAGTTCAACCCCTGCTTGGGACTTCACAACCTCTCACTACCCTGGTGGTAGATCAGACCCACGATTTACTGGGGCATTTGGTGGTGACCGCACGCCTAGAGGACGAGACTCAGCATCAGTTTGTGATGTAGTCTTAGAGGACGAGGATGAGCCTAAGGAGTGGATGGCAGTGGTGGAACCAGGGGTTCACATTACCTTTGTGTCTCTTCCTAATGGGGGAAATGATCTTAAAAGAATTCGCTTCAGCCGAGAGATGTTTAATAAATGGCAAGCGCAAAGATGGTGGGGTGAGAATTACGACAGAATCATGGAACTTTATAACGTGCAGAGATTTAATCGACAGGCACTCAACACTCCTCCAAGGTCTGAGGACGAGCCAAGAGATTCTACCTACACAAGATTGACATCTGCACAGGAAAGTCCCATGGCCTCAAACAAGGATTGGACCCCCAGGAGTCACTATAAACCTTCTGGGAGCAGAGGATATTACCCCTCTGAACCGTTGGATCATGGTGGAGGTGGTGGGCACTTCCATGCAGGGCCATCTATGGAACCAGCGAGGGATACTACTGCTTCTAGAGATGAGCCTTCTATCAGCAATGCCAGCGAAATGGAGGCAGAATGGGTAGAACAAGACGAGCCTGGGGTTTACATTACAATCCGGCAGTTAGCTGATGGGACTAGGGAGCTTCGACGTGTCAGATTCAGCCGGGAAAGATTTGGTGAGGTGAATGCAAAAACATGGTGGGAAGAAAACAGAGAGAGAATACAAGCTCAATACCTTTGA 1056 0.4858 MFTCIACTKQTTDEREEEGGVRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSNYKKGHRPYPDFDTISEGVPYPYIGGASSSSTPAWDFTTSHYPGGRSDPRFTGAFGGDRTPRGRDSASVCDVVLEDEDEPKEWMAVVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQALNTPPRSEDEPRDSTYTRLTSAQESPMASNKDWTPRSHYKPSGSRGYYPSEPLDHGGGGGHFHAGPSMEPARDTTASRDEPSISNASEMEAEWVEQDEPGVYITIRQLADGTRELRRVRFSRERFGEVNAKTWWEENRERIQAQYL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g03006 351 MobiDBLite consensus disorder prediction 13 32 - -
Viun3g03006 351 Pfam Transcription factor BRX N-terminal domain 24 57 IPR027988 -
Viun3g03006 351 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Viun3g03006 351 MobiDBLite consensus disorder prediction 206 295 - -
Viun3g03006 351 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 351 IPR044532 -
Viun3g03006 351 MobiDBLite consensus disorder prediction 221 242 - -
Viun3g03006 351 ProSiteProfiles BRX domain profile. 296 351 IPR013591 -
Viun3g03006 351 Pfam Transcription factor regulating root and shoot growth via Pin3 295 350 IPR013591 -
Viun3g03006 351 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g03006 Viun-Chr3 36485672 36491399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g03006 1 351 Major Intrinsic Protein MIP AT1G31880 68.889 3.85e-170 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g03006 - - ccaj:109789470 682.945