Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02999 ATGATCACTGATGTGCCCCCATCTATGGTTCCAAACGGTAGGTCAAGCAGATATTCCTTTGGCTCTAGCAATGGCAATGATGATACCCCTGCACACAACGGTGCCGCTGTTATCAATGTTGATGACTATGATAGTGATAGCTCCAATTTTGCCCCACCCACGCCATCAACTACTTCAATGGCTGTTCCTGCAGAGCTCGCTGGAGCTGTACCCTTGATCAACAGATTCCAGGTGGATGGATTTTTAAAATTGATGCAGAAGCAAATTCAATCCGCTGGGAAACGTGGATTTTTTTCTAAAAGATCTGTAGGTCCTCAAGTTCGAGAAAAAGTTACATTTGAGGATATGTTGAGTTTTCAAAAGGATCCAATTCCAACATCATTGCTCAAGTTAAATGTTGATTTAGTAAGCCGGGCGACAAAATTATTCCAAATAATTTTGAAATACATGGGAATTGATGCATCTGATCGAGTAACTCCTATAAGCTTAGATGAACGGGTTGAACTTGTAGGGAAACTATACAAGCAAAATTTGAAACGACCAGAACTACGAGATGAACTTTTTGTTCAGATATCAAAGCAGACAAGAAATAACCCTGAGAGGCAATACTTGATTAAAGCTTGGGAGCTGATGTATTTATGTGCATCCTCAATGTCTCCTAGTAAAGACATTAGCAGTTACCTATCAGAATACATTCATAACGTAGCAAATGGTGTGGCTACTGATTCCGAGATCCAAGTCCTTGCATTAAATTCATTAAATGCTTTGAAGCATTCTGTCAAGGCTGGTCCCAGACATATAATTCCTGGGCGTGAGGAGATTGAAGCTCTGTTGACCGGGAGAAAGCTTACAACAATAGTGTTCTTTCTAGATGAAACATTTGAAGAAATTGCATATGACATGTCAACCACAGTTTCTGATGCTGTTCAGGAACTTGCAGGGCTCATTAAACTATCAGCATACTCCAGCTTTAGTCTATTTGAATGTCGTAAAGTTGTTACTGGCTCCAAAGCACCTGATGTTGGGAATGAGGAGTACATTGGGTTAGATGAGAACAAATATATTGGGGATCTGCTGGCAGAATTCAAAGTTGCGAAGGATCGAAGTAAAGGAGAAATCTTGCACTGTAAATTGATATTCAAGAAAAAGTTATTTCGGGAGTCAGATGAAGCTGTGACAGAACCAATGTTTGTGCAATTGTCTTACGTACAACTGCAACATGATTATATTTTGGGCAATTACCCTATTGGAAGAGATGATGCCGCTCAGCTTTCTGCTCTACAAATCTTGGCTGAGATTGGTTTTCTTAGCACACCAGAATCATGCACTGACTGGAATTCACTTCTTGAGCGTTTCCTGCCAAGACAGATTTCAATGACACGAGCAAAACGGGAATGGGAGTATGACATTATTTCTCGTTATCGTTCGTTGGAAAATCTGACAAAAGATGATGCGCGGCAACAATTTCTGCGTATATTGAGAGCACTTCCTTATGGAAATTCTGTTTTCTTCAATGTTCGCAAGATTGATGACCCTATTGGACTCTTACCTGGTCGGATAATTTTGGGAATTAATAAAAGAGGGATTCATTTTTTCCGCCCAGTTCCTAAGGAATATTTGCACTCGGCTGAGTTGAGAGACATAATGCAATTTGGGAGCAGCAATACTGCGGTCTTTTTTAAAATGAGAGTTGCAGGAGTTCTCCACATATTCCAGTTTGAAACCAAGCAGGGAGAGGAAATTTGTGTAGCTCTTCAGACTCATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGATCTGCTGCTGGTGCTGGTTCTTTGAATGGAGCTATTCCTAATAATTCTTCTAAACCTCCAAATATGGAATTATATGAGAAGCGTGTCCAAGACTTGTCAAAACTAATTGAAGAATCTCAGAAAAATGCTGATCAATTGCTTGAAGAATTACGTGTGAAGCAAAGACAAGAAGAGAAAATGCAAGAAGAATTGGATGGCTTGAAAGAATCCCTAAAAGCTGATAAGCAAAATCTAGATTCTGTTACACGTGACCGTGATAGACTTAGATCATTATGCAATGCAAAAGATAAGGAACTACAGCAGGCTGCTATTCTAGACAAAAGGAATATGGAATCCAGGATGGCCAAGTTAAATAATGCGGTGATAGAGAAAACTGCCAAAAAGGATCTTGCTGATGCTGGAAGTAGACAAGTGACTCAAAAGCTTGAAGATGAGCTAAAAGTTTGTAAATATGAGCTGTTTGCAGCCAATGAGACTATCAAAAGCTTGAAAAATGAAATAATGATTTTGGAACAGAATTTGTCTGCCCTTGAAAAGAGGAATGCCGGAGAGATTAGTTCCCTTCAATGGAAACTTGAGCAAGAACGCAAAGCTGTTAAGTCTGAAGCATACGAGCTTGAAAGAAAGCTAGAAGGGTGTAGACAAGAATTATTGGCTGCTAAGGCAACTATTTCAGCCAAGGACTCTGAGTTGGTTTCAATGCAAAATAATTTGAAGGAACTAGAAGAATTGAGAGAAATGAAAGAGGATATTGACAGAAAGAATGAACAGACAGCTGCCATACTGAAAATGCAAGGAGCTCAATTAGCTGAAATGGAAACACTTTATAAGGAAGAACAAGTTTTAAGGAAGCGCTATTTTAATGTAATAGAAGACATGAAAGGCAAGATTAGAGTTTACTGTCGACTAAGGCCTCTCAATGAGAAAGAGATCGCTGAGAAAGAAAGAAAAGCTCTCACTGCAGTAGATGAGTTTACAGTGGAATATCCATGGAAAGATGACAAGCCAAAGCAGTACATATATGACCGTGTTTTTGATGCTGTTGCAACTCAAGAAAGTGTATTTGAGGATACAAAGTATTTGGTGCAATCTGCTGTAGATGGTTATAATGTTTGCATATTTGCTTATGGTCAAACCGGCTCTGGAAAGACATTTACAATCTATGGATCAGACAACAACCCTGGGCTTACCCCTCGTGCAATTGCAGAACTTTTTAGAATTTTAAGAAGAGATAATAACAAGTACTCATTTTCCTTGAAGACATACATGGTGGAATTGTATCAAGATACCCTCATAGATCTTTTGGCACCAAAGAATGGAAAACATTTAAAATTGGATATCAAGAAGGATTCGACGGGAATGGTAGTTGTGGAAAATGTGACAGTTATGTCAATTTCTACAATTGAAGAATTGAATACCATAATACAAAGAGGATCTGAGCGGCGACATATATCAGGAACCCAAATGAATGATGAAAGTTCAAGATCTCATCTCATTCTATCAATTGTAATTGAAAGTACCAACCTTCAAAGTCAGTCAGTTGCAAGGGGAAAGCTGAGTTTTGTGGATCTTGCTGGTTCAGAACGAGTGAAAAAGTCAGGTTCTACGGGGAGTCAGCTGAAGGAAGCTCAAAGCATTAACAAGTCATTATCAGCACTTGCAGATGTTATCAGTGCTTTGTCTTCTGGTGGTCAACACACACCATACAGGAATCACAAGTTAACCATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTAATGTTTGTGAATGTTTCTCCAGCAGAATCAAATTTGGATGAGACACATAACTCTCTCATGTATGCATCCCGAGTCAGATCCATTGTGAATGACCCCAGCAAGAATGTTTCTTCAAAGGAGATAGCAAGGCTGAAGAAGTTGGTTGCATATTGGAAACAGCAAGCTGGTAAAGGACCTGAGTTTGAAGACTTAGAAGAAATTCAAGATGAAAGGCCAACTAAAGAAAATGGTAGTGGCAATAGGTAA 3816 0.3926 MITDVPPSMVPNGRSSRYSFGSSNGNDDTPAHNGAAVINVDDYDSDSSNFAPPTPSTTSMAVPAELAGAVPLINRFQVDGFLKLMQKQIQSAGKRGFFSKRSVGPQVREKVTFEDMLSFQKDPIPTSLLKLNVDLVSRATKLFQIILKYMGIDASDRVTPISLDERVELVGKLYKQNLKRPELRDELFVQISKQTRNNPERQYLIKAWELMYLCASSMSPSKDISSYLSEYIHNVANGVATDSEIQVLALNSLNALKHSVKAGPRHIIPGREEIEALLTGRKLTTIVFFLDETFEEIAYDMSTTVSDAVQELAGLIKLSAYSSFSLFECRKVVTGSKAPDVGNEEYIGLDENKYIGDLLAEFKVAKDRSKGEILHCKLIFKKKLFRESDEAVTEPMFVQLSYVQLQHDYILGNYPIGRDDAAQLSALQILAEIGFLSTPESCTDWNSLLERFLPRQISMTRAKREWEYDIISRYRSLENLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGLLPGRIILGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSAAGAGSLNGAIPNNSSKPPNMELYEKRVQDLSKLIEESQKNADQLLEELRVKQRQEEKMQEELDGLKESLKADKQNLDSVTRDRDRLRSLCNAKDKELQQAAILDKRNMESRMAKLNNAVIEKTAKKDLADAGSRQVTQKLEDELKVCKYELFAANETIKSLKNEIMILEQNLSALEKRNAGEISSLQWKLEQERKAVKSEAYELERKLEGCRQELLAAKATISAKDSELVSMQNNLKELEELREMKEDIDRKNEQTAAILKMQGAQLAEMETLYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLNEKEIAEKERKALTAVDEFTVEYPWKDDKPKQYIYDRVFDAVATQESVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSDNNPGLTPRAIAELFRILRRDNNKYSFSLKTYMVELYQDTLIDLLAPKNGKHLKLDIKKDSTGMVVVENVTVMSISTIEELNTIIQRGSERRHISGTQMNDESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSTGSQLKEAQSINKSLSALADVISALSSGGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETHNSLMYASRVRSIVNDPSKNVSSKEIARLKKLVAYWKQQAGKGPEFEDLEEIQDERPTKENGSGNR 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02999 1271 SMART MyTH4_1 119 278 IPR000857 GO:0005856
Viun3g02999 1271 CDD KISc_C_terminal 895 1220 - -
Viun3g02999 1271 Gene3D - 501 609 IPR011993 -
Viun3g02999 1271 ProSiteProfiles FERM domain profile. 283 597 IPR000299 GO:0005856
Viun3g02999 1271 ProSiteProfiles MyTH4 domain profile. 119 278 IPR000857 GO:0005856
Viun3g02999 1271 Pfam FERM central domain 389 503 IPR019748 -
Viun3g02999 1271 MobiDBLite consensus disorder prediction 1 34 - -
Viun3g02999 1271 Coils Coil 708 728 - -
Viun3g02999 1271 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 98 280 - -
Viun3g02999 1271 Pfam MyTH4 domain 172 276 IPR000857 GO:0005856
Viun3g02999 1271 Gene3D - 395 496 IPR014352 -
Viun3g02999 1271 Coils Coil 754 781 - -
Viun3g02999 1271 PANTHER MYOSIN VII, XV 11 903 - -
Viun3g02999 1271 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 501 610 - -
Viun3g02999 1271 Gene3D Kinesin motor domain 837 1219 IPR036961 -
Viun3g02999 1271 Gene3D - 282 386 - -
Viun3g02999 1271 FunFam Kinesin-like calmodulin binding protein 386 497 - -
Viun3g02999 1271 MobiDBLite consensus disorder prediction 1248 1271 - -
Viun3g02999 1271 Coils Coil 623 685 - -
Viun3g02999 1271 FunFam Kinesin-like calmodulin-binding protein 841 1220 - -
Viun3g02999 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 1245 IPR027417 -
Viun3g02999 1271 PRINTS Kinesin heavy chain signature 969 990 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 PRINTS Kinesin heavy chain signature 1088 1105 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 PRINTS Kinesin heavy chain signature 1119 1137 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 PRINTS Kinesin heavy chain signature 1168 1189 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 ProSiteProfiles Kinesin motor domain profile. 897 1218 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 Coils Coil 825 862 - -
Viun3g02999 1271 MobiDBLite consensus disorder prediction 9 30 - -
Viun3g02999 1271 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 282 385 - -
Viun3g02999 1271 Coils Coil 797 817 - -
Viun3g02999 1271 ProSitePatterns Kinesin motor domain signature. 1118 1129 IPR019821 GO:0003777|GO:0005524|GO:0007018
Viun3g02999 1271 SUPERFAMILY PH domain-like 503 591 - -
Viun3g02999 1271 CDD FERM_C_KCBP 500 608 - -
Viun3g02999 1271 SUPERFAMILY Prismane protein-like 840 902 IPR011254 GO:0003824|GO:0016491
Viun3g02999 1271 SUPERFAMILY Second domain of FERM 381 498 IPR035963 -
Viun3g02999 1271 Pfam Kinesin motor domain 903 1218 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 SMART kinesin_4 895 1226 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Viun3g02999 1271 Gene3D - 1221 1268 - -
Viun3g02999 1271 SMART B41_5 279 503 IPR019749 -
Viun3g02999 1271 MobiDBLite consensus disorder prediction 1245 1271 - -
Viun3g02999 1271 Gene3D MyTH4 domain 98 280 IPR038185 -
Viun3g02999 1271 CDD FERM_B-lobe 398 496 IPR019748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02999 Viun-Chr3 36421890 36431806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02999 51 1267 Calmodulin-binding Proteins AT5G65930 73.892 0.0 1821