Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02975 ATGGGTTCCAATGGAAGCAAAGCCACTTCTTCTTCGCCGTCGGCGAGTTTAAGGAAGGGTCGATCTAAGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAACTACTTCTGGTTCTCACGACAGTGATAATGCAGACCAGGTGAAAACAGAGTCATTTACAAAGGTTAAAGCTAGTGAAATAACTTGTATGCCTTCTGACATTGACCTTCATGAATGGGGAGAAACAAGCATCCCAAACACCTCATCCAGAAGTGTTAGCAGCTCTAGCCATAATTATTCAACCCATTCCTTGAACCCTACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCAGGTAGTGTAAGCTTTAGACTTAGCAGAACCACCAGTTTGGGGTCATCATGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCCTTAATTGACAAGGAAGATGAGTGTAATCTCCACCCTAGATCTCCTGGAAGTTCGATTAACAGAAGAGAAGCACAAGAAAGCAATAACATGCTTCATGCATCTTTTTTCAATCAAATACATGCACAATATCATGAAGATGCTACTAATAATTTAAGTGTCCTTACATCAGATACACTTGGAAACTTGCAGAGAAATCCCACAGATTTAGTTCCCACAAGAGAAGGGCTGGGTGTGAACTTATTTTCTCCAAGAATTCAAACAGAGACGGATATTATTGACATTGGAAATATTAATCGGCAATCAGTTGAACAGAATGTTCATTTTAACCGAACTTTAAGTGTTGGAAGACTTCATGACAGAGTTCTTGGTAGAACAACATTTTCAGACCTCACCTTTTTCCCTTTGCAACAGGAAAGAGAACTGAGAGATGCTAGCCACCATAGCCAGGATATTGACAGGCAATCAGTGGAGGGAGATTCAAGAGTGTCATCATCTGATCATACGACCGTTAATTCTTCTACATCTAGCATGTCTAACTCCATGTTTGGTATCCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTTCTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCTTGTCTGGCCAACATAGAAATGGTCATTGTACATGCCGAATGAATAATCGACACACTAATTCAAATGATGATACCGGTGCCAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGGTCATCTGTATCTTGTATTGGATCTGTTCCTGCACCGAATGATGTTGTTGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCACAAGCATCAAGACGATGGTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGAGAGTACTGCCATGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGCAGATTCAAAGGGTATGTCCACTTTGCAGAGGGGACATATGCATATCCGATTCAACGCCAACAGAAAACAACAGTGTGTAG 1602 0.4157 MGSNGSKATSSSPSASLRKGRSKGLRVFQSYCLGTTSGSHDSDNADQVKTESFTKVKASEITCMPSDIDLHEWGETSIPNTSSRSVSSSSHNYSTHSLNPTSHFLSQLSLIPGSVSFRLSRTTSLGSSWPCPVSSASLSLIDKEDECNLHPRSPGSSINRREAQESNNMLHASFFNQIHAQYHEDATNNLSVLTSDTLGNLQRNPTDLVPTREGLGVNLFSPRIQTETDIIDIGNINRQSVEQNVHFNRTLSVGRLHDRVLGRTTFSDLTFFPLQQERELRDASHHSQDIDRQSVEGDSRVSSSDHTTVNSSTSSMSNSMFGIQDYEVETSRLREGRYQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRMNNRHTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRSSVSCIGSVPAPNDVVDSLPVKLYEKLHKHQDDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKQIQRVCPLCRGDICISDSTPTENNSV 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02975 533 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 529 - -
Viun3g02975 533 Pfam Ring finger domain 474 517 IPR001841 -
Viun3g02975 533 SMART ring_2 475 516 IPR001841 -
Viun3g02975 533 FunFam Putative RING zinc finger domain superfamily protein 444 522 - -
Viun3g02975 533 SUPERFAMILY RING/U-box 453 524 - -
Viun3g02975 533 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g02975 533 MobiDBLite consensus disorder prediction 300 318 - -
Viun3g02975 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 438 521 IPR013083 -
Viun3g02975 533 ProSiteProfiles Zinc finger RING-type profile. 475 517 IPR001841 -
Viun3g02975 533 MobiDBLite consensus disorder prediction 280 299 - -
Viun3g02975 533 MobiDBLite consensus disorder prediction 1 18 - -
Viun3g02975 533 MobiDBLite consensus disorder prediction 280 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02975 Viun-Chr3 36120173 36124563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02975 207 524 C3H Transcription Factor Family AT5G45290 58.683 2.73e-111 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02975 - - gmx:100812272 764.992