Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02974 ATGGGTTCCAATGGAAGCAAAGCCACTTCTTCTTCGCCGTCGGCGAGTTTAAGGAAGGGTCGATCTAAGGGCCTTAGAGTTTTTCAATCTTATTGTCTTGGAACTACTTCTGGTTCTCACGACAGTGATAATGCAGACCAGGTTTGTGATCAGAATAAAGTAAATGGCAGTGATCTTACATGTACTAATGGCAATTTAACAAATTCGTATCAGGTGAAAACAGAGTCATTTACAAAGGTTAAAGCTAGTGAAATAACTTGTATGCCTTCTGACATTGACCTTCATGAATGGGGAGAAACAAGCATCCCAAACACCTCATCCAGAAGTGTTAGCAGCTCTAGCCATAATTATTCAACCCATTCCTTGAACCCTACAAGTCATTTCCTTTCTCAGCTTAGCCTCATTCCAGGTAGTGTAAGCTTTAGACTTAGCAGAACCACCAGTTTGGGGTCATCATGGCCTTGTCCTGTTTCTTCTGCAAGTCTCTCCTTAATTGACAAGGAAGATGAGTGTAATCTCCACCCTAGATCTCCTGGAAGTTCGATTAACAGAAGAGAAGCACAAGAAAGCAATAACATGCTTCATGCATCTTTTTTCAATCAAATACATGCACAATATCATGAAGATGCTACTAATAATTTAAGTGTCCTTACATCAGATACACTTGGAAACTTGCAGAGAAATCCCACAGATTTAGTTCCCACAAGAGAAGGGCTGGGTGTGAACTTATTTTCTCCAAGAATTCAAACAGAGACGGATATTATTGACATTGGAAATATTAATCGGCAATCAGTTGAACAGAATGTTCATTTTAACCGAACTTTAAGTGTTGGAAGACTTCATGACAGAGTTCTTGGTAGAACAACATTTTCAGACCTCACCTTTTTCCCTTTGCAACAGGAAAGAGAACTGAGAGATGCTAGCCACCATAGCCAGGATATTGACAGGCAATCAGTGGAGGGAGATTCAAGAGTGTCATCATCTGATCATACGACCGTTAATTCTTCTACATCTAGCATGTCTAACTCCATGTTTGGTATCCAAGACTATGAGGTTGAGACTTCACGATTGAGAGAAGGTAGGTATCAGGATCTTCTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATGCGGTCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGATAGATCATGTATCTTGTCTGGCCAACATAGAAATGGTCATTGTACATGCCGAATGAATAATCGACACACTAATTCAAATGATGATACCGGTGCCAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTTGTTTTATCTTCCCGGTCATCTGTATCTTGTATTGGATCTGTTCCTGCACCGAATGATGTTGTTGATTCCTTGCCTGTCAAGTTATATGAGAAGTTGCACAAGCATCAAGACGATGGTGCTCAATGCTATATATGCCTTGTGGAGTATGAGGATGGAGACAACATGAGAGTACTGCCATGCCATCATGAATTTCATAGAACATGTATAGACAAGTGGCTGAAGCAGATTCAAAGGGTATGTCCACTTTGCAGAGGGGACATATGCATATCCGATTCAACGCCAACAGAAAACAACAGTGTGTAG 1674 0.4116 MGSNGSKATSSSPSASLRKGRSKGLRVFQSYCLGTTSGSHDSDNADQVCDQNKVNGSDLTCTNGNLTNSYQVKTESFTKVKASEITCMPSDIDLHEWGETSIPNTSSRSVSSSSHNYSTHSLNPTSHFLSQLSLIPGSVSFRLSRTTSLGSSWPCPVSSASLSLIDKEDECNLHPRSPGSSINRREAQESNNMLHASFFNQIHAQYHEDATNNLSVLTSDTLGNLQRNPTDLVPTREGLGVNLFSPRIQTETDIIDIGNINRQSVEQNVHFNRTLSVGRLHDRVLGRTTFSDLTFFPLQQERELRDASHHSQDIDRQSVEGDSRVSSSDHTTVNSSTSSMSNSMFGIQDYEVETSRLREGRYQDLLEHRSNFLERRRRMRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGHCTCRMNNRHTNSNDDTGARASISRIVMLAEALFEVLDEIHQQSVVLSSRSSVSCIGSVPAPNDVVDSLPVKLYEKLHKHQDDGAQCYICLVEYEDGDNMRVLPCHHEFHRTCIDKWLKQIQRVCPLCRGDICISDSTPTENNSV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02974 557 ProSiteProfiles Zinc finger RING-type profile. 499 541 IPR001841 -
Viun3g02974 557 MobiDBLite consensus disorder prediction 1 22 - -
Viun3g02974 557 MobiDBLite consensus disorder prediction 304 323 - -
Viun3g02974 557 SUPERFAMILY RING/U-box 477 548 - -
Viun3g02974 557 SMART ring_2 499 540 IPR001841 -
Viun3g02974 557 Pfam Ring finger domain 498 541 IPR001841 -
Viun3g02974 557 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 553 - -
Viun3g02974 557 MobiDBLite consensus disorder prediction 98 117 - -
Viun3g02974 557 MobiDBLite consensus disorder prediction 304 342 - -
Viun3g02974 557 FunFam Putative RING zinc finger domain superfamily protein 468 546 - -
Viun3g02974 557 MobiDBLite consensus disorder prediction 324 342 - -
Viun3g02974 557 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 462 545 IPR013083 -
Viun3g02974 557 MobiDBLite consensus disorder prediction 1 18 - -
Viun3g02974 557 MobiDBLite consensus disorder prediction 99 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02974 Viun-Chr3 36120173 36124563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02974 231 548 C3H Transcription Factor Family AT5G45290 58.683 4.57e-111 340