Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02973 ATGTCTTTCAATATCATGCTCCAATCCTGCCCTTTGCTCACCCTTCTTTTTCTTTTACTTCTTCACACTTTCTCAATACCGACATGTCATTGCCAAACCACCGCTTCTCCTCCTCAGAACATTGAAACTTTCTATCCAAATCAAACTTCAGCACCACAACAACCTGAGACTTCGCCACAGACACAACAACAACCACCACCACCACCACCACCAATTGGTGGCTCGGCACCTGGCCGTGGTTCTTCCGGTCGTAAGATAGCCAAGGCGGTGGCTGCAACTGCAGCCAGCACCATAGTTTTTTGTGGTTTAATTTTCTTTGTGGTGCAGAGGTGCTTGAGGGCCAGAAAGAGAAAGAGAGAGGTGATAAGTAACGCCGCTTCTGGTGGAGATAACCGTGTTGTGCCTCAGGGAAATGTGTTCGAGAGAATTGATGGAAATGTGAAGGGGTTGATTGTGGATGAGGATGGTTTGGATGTGATTTATTGGAGAAAGCTTCAATCGAAGAACTCTAACAAGGATCTACATAAGGAGGTTTTGAGTAGTCCCAGAAACAAAGAAAAAGAAGATGATCATGATCAAAATCAAGCCAAGAAGTCCAAGTCCGTCCAAGAAGTTCCTCTCCTTAGAGGAAAATCTTCAACTTCCCACTTGAATGTATCTCCAGAAGAGGATGAACCATACAGATTTTCCCCACTTCCTTCTCCTCCTTCTGTTTCTGCTTCTACTCTTCCTTCATCAGCTGGGGTTGTTATCAAGGGTCCTCAGAAACCAGATTCTCCAATTCAACCCTCAACTCCACCCCCTCCCGTTTCACCATCAACACCTTCATCTTCTGTTTCTGTTTCAGCTGTTCCAGAAGCGAATAATCCTGCTCCGGCACCTCCCCCTCCCCCAATCCCAGCCAGAAGGAGTCCAGCACCACCTCCTCCTCCTCCAGCCTCATCAAAAACACTACCTCCTCCCATTGAAATCCCGGCTATTAAGCAAGGAAACTCTTCAGGAAAAGGCATCCCAGAAACCAGCAATGACCAAGTGAAGCTGAAGCCTCTGCATTGGGATAAGGTGAACACTAATAATGCTGATCACTCCATGGTTTGGGACAAAGTTGATCGTGGCTCTTTCAGGGTTGATCAAGATCTCATGGAAGCTCTCTTCGGTTATGTCGCCACCAACCGGAGATCTCCCAAAGGAAAAAGTCACTCAGCCATTCCTAGCAAGGATACCTCTGCTTCATCTGCAAAAGTTTTCCTTCTTGACCCGAGAAAATCACAGAACATTGCTATTGTTCTCAAATCTCTTGCAGTCTCACTAGGTGAAATTGTAGATGCACTCACTGATGGTAAGGGCCTCAAACCAGATACTCTTGAAAAGCTTGCTAGAGTTTCCCCTACAGAAGAAGAGGAATCTCTTATCCTTGAATACAAAGGAGACCCGGCAAGACTTGCAGCAGCTGAATCTTTCCTTTATAATCTCCTCAAAGCTGTTCCCTCAGCTTTTAAGCGCTTGAATGCCATGCTATTCAGGTTGAACTATGACTCGGAGATTCAAGAAACCAAGGAATCTCTTCAGACCATTGAACAGGGTTGTAAGGAGCTTAAAAATAAAGGACTCTTTGTGAAGCTTCTTGAAGCAGTGCTCAAGGCAGGAAACCGAATGAATGCAGGAACTGCAAGGGGCAATGCACAGGCTTTCAATTTGGCTTCTCTAAGGAAACTCTCTGATGTTAAGAGCACCGATGGAAAAACCACATTACTTCACTTTGTGGTTGAAGAGGTTGTTCGTTCGGAGGGTAAAAGGGTTGCTCTTAACCGCAATGGCAGCCTGAGAAGTAGTAGCAGTAGGAGCAGCAGCAGCAGTAGCAATGGAAACTATGAGAACATTGCTGCTTCAAATGAAGTGATAGAAAGGGAATATGTGACACTAGGATTGCCAATTGTAGGAGGGATCAGTTCTGAGTTATCCAATGTTAAGAAAGCAGCACAAATAGATTATAACAATTTAGTGAATTCAATCTCAGCCCTCTCAACCCGGTTAGTCAAAGTTCAAGAACTGGTTTCCCTGTGTGGAAATGGTGAAGGACAACATTTTGTAAAAGAAATGGATCATTTTCTTAGAAATGCTGAGGAAGAGCTGAAATTATTGAGGGATAAGCAAGATAGTGTATTGCAGCTTATCAAGAAAACAACACAATACTATCAAGGAGGAGCTTCCAAAGAAACTGCAGAAGACAATCTTCAATTGTTTGTCATAGTGAAGGATTTTCTGGGAATGGTTGATCAAGTTTGCATTGAGATTGCACGTGATATGCAGAAGAGAAAATTTCCTCCTAAGGCCATTTTTGGGTAG 2346 0.4416 MSFNIMLQSCPLLTLLFLLLLHTFSIPTCHCQTTASPPQNIETFYPNQTSAPQQPETSPQTQQQPPPPPPPIGGSAPGRGSSGRKIAKAVAATAASTIVFCGLIFFVVQRCLRARKRKREVISNAASGGDNRVVPQGNVFERIDGNVKGLIVDEDGLDVIYWRKLQSKNSNKDLHKEVLSSPRNKEKEDDHDQNQAKKSKSVQEVPLLRGKSSTSHLNVSPEEDEPYRFSPLPSPPSVSASTLPSSAGVVIKGPQKPDSPIQPSTPPPPVSPSTPSSSVSVSAVPEANNPAPAPPPPPIPARRSPAPPPPPPASSKTLPPPIEIPAIKQGNSSGKGIPETSNDQVKLKPLHWDKVNTNNADHSMVWDKVDRGSFRVDQDLMEALFGYVATNRRSPKGKSHSAIPSKDTSASSAKVFLLDPRKSQNIAIVLKSLAVSLGEIVDALTDGKGLKPDTLEKLARVSPTEEEESLILEYKGDPARLAAAESFLYNLLKAVPSAFKRLNAMLFRLNYDSEIQETKESLQTIEQGCKELKNKGLFVKLLEAVLKAGNRMNAGTARGNAQAFNLASLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRVALNRNGSLRSSSSRSSSSSSNGNYENIAASNEVIEREYVTLGLPIVGGISSELSNVKKAAQIDYNNLVNSISALSTRLVKVQELVSLCGNGEGQHFVKEMDHFLRNAEEELKLLRDKQDSVLQLIKKTTQYYQGGASKETAEDNLQLFVIVKDFLGMVDQVCIEIARDMQKRKFPPKAIFG 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02973 781 MobiDBLite consensus disorder prediction 40 58 - -
Viun3g02973 781 MobiDBLite consensus disorder prediction 171 198 - -
Viun3g02973 781 Coils Coil 515 535 - -
Viun3g02973 781 MobiDBLite consensus disorder prediction 234 248 - -
Viun3g02973 781 MobiDBLite consensus disorder prediction 40 83 - -
Viun3g02973 781 MobiDBLite consensus disorder prediction 604 623 - -
Viun3g02973 781 MobiDBLite consensus disorder prediction 206 220 - -
Viun3g02973 781 PANTHER FORMIN-RELATED 18 769 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Viun3g02973 781 MobiDBLite consensus disorder prediction 259 274 - -
Viun3g02973 781 Pfam Formin Homology 2 Domain 341 758 IPR015425 -
Viun3g02973 781 MobiDBLite consensus disorder prediction 171 342 - -
Viun3g02973 781 MobiDBLite consensus disorder prediction 59 75 - -
Viun3g02973 781 SMART it6_source 337 773 IPR015425 -
Viun3g02973 781 MobiDBLite consensus disorder prediction 288 319 - -
Viun3g02973 781 SUPERFAMILY Formin homology 2 domain (FH2 domain) 350 773 - -
Viun3g02973 781 Coils Coil 697 724 - -
Viun3g02973 781 ProSiteProfiles Formin homology-2 (FH2) domain profile. 337 781 IPR015425 -
Viun3g02973 781 Gene3D Formin, FH2 domain 357 776 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02973 Viun-Chr3 36109526 36112774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02973 11 773 FH2 protein (formin) Gene Family AT1G70140 45.443 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02973 - - gmx:100781860 1024.62