Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02966 ATGAAGAGGTCAAGGGATGATGCTTACATGAGTCCACAACATAAACGGCCTATGGTGTCTTCTAGAGGAGAACCCTCGGGGCAACCACAGATGATGAGTGGTGGTGGTCAGAGACTAACCACAAATGATGCCTTGGCATATCTCAAGGCTGTAAAGGATATGTTTCAAGATAAGAGAGAAAAGTATGATGACTTTCTGGAAGTCATGAAGGATTTCAAGGCTCAAAGAATTGATACAACTGGTGTCATAGCAAGAGTGAAGGATCTGTTTAAAGGGCACAAAGATCTCATTTTAGGATTTAACACCTTCTTGCCAAAGGGATATGAAATTACACTTCCATTGGAGGATGAACAACCTCCCCAAAAGAAGCCTGTTGAATTTGCAGAAGCCATAAGTTTTGTGGGCAAGATTAAGACTCGCTTTCAAAGCAATGACAGTGTTTATAAGTCATTTCTAGACATATTAAATATGTATAGAAAGGAAACTAAGTCTATCACTGAGGTTTACGAGGAGGTTGCTGCACTTTTCCAGGACCATGCAGATCTTCTTGAGGAGTTTACGCATTTTCTTCCTGATACTTCAGGAACAGCCTTTAATCACTATGCTTCTACTCGAAATCCTCTGCTTCGTGATAGGAGCTCTGCGATGCCAACAGTGAGGCAAATGCATGTTGAAAAGAGAGAGAGGAACATTGCTTCACAAGGTGATCGTGACTTCAGTGCTGACCATCCTGATCCAGAACTTGACAGAGGTTTGATCAAGGCTGATAAGGATCAGAGGAGGCGTGGGGAGAAGGAAAAAGAAAGTAGAGAAGAGAAAGACAGGAGACAGCGGGAAAGGGATGACAGAGATTATGATCACGATGGTAGTAGGGAAAATTTATCTCACAAGCGGAAATCTGCTTGTAGGGCTGAAGATTCTGGCGCTGAACCGATGCATGATACTGATGAAAATTTTGGCATGCACCCTGTCTCATATGCATGTGAGGATAAAAGTTCTTTGAAAAGTATGTATAGTCCAGTGATTGGTTACCTTGACAAAGTGAAGGAGAAATTACCAAATCCCGAGGATTACCAGGAATTTTTGAAGTGCCTAAACATCTACTGCAAGGAAATAATTGCCCGTCATGAATTGCAATCATTGGTGAGCAATTTGCTGGGAAAACATGCAGACCTTATGGATGGATTTGATGAATTTTTGTCTCAATGTGAAAAGAATGAAGGATTCCTAGCTGGTCTTCTAAAAAAAGTAAAATCCTTTTGGCATGAAGGACATGGACCTAAACCAATGAAGCTAGAGGACAGGGATCGTGATAGGGATGATGGGATGAAAGAAAGGGATCGTAGAGAAAGGGACAAATCCAATGCAATTGCTAACAAGGATGTTTCTGCTCCTAAGATGTTTCAATATGGCAGCAAAGATAAGTATTCAGGAAAGCCTATAAGTGAGCTGGATCTTTCCAACTGTGAACAATGCACCCCTAGTTATCGCCTTCTACCCAAAAATTACCTAATACCGCCAGCCAGCCAGAGAACAGAACTTGGTGCAGAGGTGTTGAATGATTACTGGGTTTCTGTTACTTCGGGTAGTGAGGACTATTCCTTTAAACATATGCGCAAAAATCAGTATGAGGAGAGTTTGTTTAGATGTGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTAAATGTGGCAACTAAGCGTGTTGAAGAACTCTTAGAAAAGATTAATGCTAATATAATTAAAGGAGACAGTCCAATTCGTATTGAGGAGCACTTGACAGCTCTAAATCTTAGATGCATAGAAAGACTATATGGTGATCACGGGCTTGATGTAATGGATGTGCTAAAGAAGAATGCATCTTTAGCTTTGCCAGTCATATTAACCCGCTTGAAGCAGAAACAGGATGAGTGGGCAAGGTGTCGTGCTGATTTTAATAAAGTTTGGGCTGAAATATATGCAAAGAACTACCACAAATCACTTGATCATCGTAGTTTTTACTTTAAGCAGCAGGATACTAAGAGCTTGAGCGCTAAAGTCTTACTGGCTGAAATCAAAGAAATTAGTGAGAAGAAAAGAAAAGAAGATGATGTTCTTCTTGCAATTGCTGCTGGAAACAGACAGCCAATTATTCCTCACTTGGAATTTGTGTATCCTGATCCAGAGATCCATGAAGATCTGTATCAACTCATAAAATATTCTTGTGGAGAAATGTGTACAACTGAACAGTTGGATAAAGCTATGAAGATTTGGACAACATTTTTAGAACCTGTGTTTGGAGTCCCGTCTCGATCTCAAGGTCCAGAGGATGTTGTCAAGGATAGGAACAATTCTGCCAAAAGTGGCACTGAAGTTGTTGCTGGTGATGGTAGTCCTGTAATCAATCCTAAGAATTTAAACATAAATAGAAATGGGGATGAAAACTTTCCATTTGAGCAATCTCATTCCTGCAAACAATGGCAACCAAGTGGACATGCTAAGGTTAAAAAGGATAATCATCTTGATTCGGACAGCTTTGCACAAAAGACTGGAGCCTTAGGGAGTAATACGCAGCAGGGTAAAATGAATATAGATGCATCTATTCCTGATGAAGTATCAAGAGCCAATAAGCAAGATCATTCCACTGAACGGTTGGTGAATGCTGATGTCTCACTATCCTCGGCTGTGGAGCAAAATAATAGAAGTACAAATGTGGATAAGGCAACAGGACTTGCTGCTACTCCATTAAGACCTGCTAATATATCTTCAGTAGGAGGAGTTGGTTTAGCTTCATTAGAGGGTGCTGATTCTGCACGACCAGTTACATCAACAAATGGGGCCATCATTGAGGACTCTAAAGTTCACAGACATCGGGAAGAATCAGTGGGACACTTCAGATGTGAAAGAGAAGAGGGTGAGTTATCACCTAATGGAGACTTTGAAGAGGATAACTTTGCAGTTTATGGACATACCAGTTCGGATGCAGTTCATAAAGGAAAGGATAGTAACATTTCCCGACCATACCAAAACAGACATGGGGAAGTAGTTCGTGGTGAAGCAGGAGGAGAAAATGATGCTGATGATGAAGGAGAAGAAAGTCCCCATAGATCATTGGAGGATAGTGAAAATGCTTCAGAAAATGGAGATATTTCTGGCACAGAGTCTGCTGATGGTGAGGAGTGTTCTCGAGAACGTGAGGAGGATGGGGGTCATGATCATGATGACAAGGCTGAGAGTGAAGGTGAGGCGGAAGGAATGGCTGATGCCAATGATGTTGAAGGGGATTGTGCCTCATTGCCATATTCAGAACGCTTTCTTGTCAATGTAAAGCCTCTGGCAAAATATGTTCCTCCGACATTGCATGAGAAAGAAAGGATTGGTCGAGTCTTTTATGGAAATGATTCCTTTTATGTGCTATTTAGACTTCATCAGACATTGTATGAGAGGATACGCTCTGCAAAGGTTAACTCATCGTCTTCTGAAAGGAAGTGGAGGGCTTCAAATGATACAGACTCTACTGATCAATATGGCAGGTTTTTAAACGCCCTTTACAATTTACTGGATGGTTCTTCTGATAGTACAAAATTTGAGGATGACTGTCGAGCTATTATTGGAACTCAATCATATGTCTTATTCACATTGGATAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTTGCCGCTGATGAGATGGATAGCAAGCTGCTTCAACTATATGCATACGAAAAATCAAGAAAACCTGGGAGATTTGTTGATTTAGTTTGTCATGAAAATGCTCGTGTTCTTCTTCATGATGAGAACATATATCGTATTGAATGTTCACCTTCACCTACCCAATTGTCTATTCAACTGATGGACTATGGATTTGATAAACCCGAAGTGACTACTGTGTCAATGGACCCTAATTTTTCGGCCTATCTGCACAATGACTTCCTATCTGTTGTCCCAGACAAAAAGGAGAAGTCTGGAATTTACTTGAAGAGGAATAAGCGCAAGAATGGCAGTGGTGATGAATTTTCAAGCCAGACCATGGATGGACTACAAATTGTCAATGGACTGGAGTGTAAGATAGCTTGCAATTCGTCTAAGGTTTCATACGTTTTAGACACTGAAGACCTTTTATATCAAACAAGAAGAAAAAAAAGGAGGTCCTTGCATCAGAGCAGTTCATGCCTTGAACAATCAAACTCCTCAAAAATTTCTTCAAGCAGAGAACAACGAGTCTGCAAATTATTTTCAAATTGA 4236 0.4053 MKRSRDDAYMSPQHKRPMVSSRGEPSGQPQMMSGGGQRLTTNDALAYLKAVKDMFQDKREKYDDFLEVMKDFKAQRIDTTGVIARVKDLFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFAEAISFVGKIKTRFQSNDSVYKSFLDILNMYRKETKSITEVYEEVAALFQDHADLLEEFTHFLPDTSGTAFNHYASTRNPLLRDRSSAMPTVRQMHVEKRERNIASQGDRDFSADHPDPELDRGLIKADKDQRRRGEKEKESREEKDRRQRERDDRDYDHDGSRENLSHKRKSACRAEDSGAEPMHDTDENFGMHPVSYACEDKSSLKSMYSPVIGYLDKVKEKLPNPEDYQEFLKCLNIYCKEIIARHELQSLVSNLLGKHADLMDGFDEFLSQCEKNEGFLAGLLKKVKSFWHEGHGPKPMKLEDRDRDRDDGMKERDRRERDKSNAIANKDVSAPKMFQYGSKDKYSGKPISELDLSNCEQCTPSYRLLPKNYLIPPASQRTELGAEVLNDYWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVATKRVEELLEKINANIIKGDSPIRIEEHLTALNLRCIERLYGDHGLDVMDVLKKNASLALPVILTRLKQKQDEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKSLSAKVLLAEIKEISEKKRKEDDVLLAIAAGNRQPIIPHLEFVYPDPEIHEDLYQLIKYSCGEMCTTEQLDKAMKIWTTFLEPVFGVPSRSQGPEDVVKDRNNSAKSGTEVVAGDGSPVINPKNLNINRNGDENFPFEQSHSCKQWQPSGHAKVKKDNHLDSDSFAQKTGALGSNTQQGKMNIDASIPDEVSRANKQDHSTERLVNADVSLSSAVEQNNRSTNVDKATGLAATPLRPANISSVGGVGLASLEGADSARPVTSTNGAIIEDSKVHRHREESVGHFRCEREEGELSPNGDFEEDNFAVYGHTSSDAVHKGKDSNISRPYQNRHGEVVRGEAGGENDADDEGEESPHRSLEDSENASENGDISGTESADGEECSREREEDGGHDHDDKAESEGEAEGMADANDVEGDCASLPYSERFLVNVKPLAKYVPPTLHEKERIGRVFYGNDSFYVLFRLHQTLYERIRSAKVNSSSSERKWRASNDTDSTDQYGRFLNALYNLLDGSSDSTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVAADEMDSKLLQLYAYEKSRKPGRFVDLVCHENARVLLHDENIYRIECSPSPTQLSIQLMDYGFDKPEVTTVSMDPNFSAYLHNDFLSVVPDKKEKSGIYLKRNKRKNGSGDEFSSQTMDGLQIVNGLECKIACNSSKVSYVLDTEDLLYQTRRKKRRSLHQSSSCLEQSNSSKISSSREQRVCKLFSN 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02966 1411 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Viun3g02966 1411 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Viun3g02966 1411 MobiDBLite consensus disorder prediction 224 318 - -
Viun3g02966 1411 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Viun3g02966 1411 Pfam Sin3 family co-repressor 490 581 IPR013194 -
Viun3g02966 1411 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Viun3g02966 1411 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Viun3g02966 1411 MobiDBLite consensus disorder prediction 765 798 - -
Viun3g02966 1411 MobiDBLite consensus disorder prediction 945 969 - -
Viun3g02966 1411 MobiDBLite consensus disorder prediction 1 38 - -
Viun3g02966 1411 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Viun3g02966 1411 MobiDBLite consensus disorder prediction 1051 1078 - -
Viun3g02966 1411 MobiDBLite consensus disorder prediction 426 457 - -
Viun3g02966 1411 MobiDBLite consensus disorder prediction 224 317 - -
Viun3g02966 1411 PANTHER SIN3B-RELATED 38 1269 IPR039774 GO:0003714
Viun3g02966 1411 MobiDBLite consensus disorder prediction 23 38 - -
Viun3g02966 1411 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Viun3g02966 1411 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Viun3g02966 1411 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Viun3g02966 1411 Pfam Paired amphipathic helix repeat 147 190 IPR003822 GO:0006355
Viun3g02966 1411 MobiDBLite consensus disorder prediction 426 458 - -
Viun3g02966 1411 Coils Coil 557 577 - -
Viun3g02966 1411 FunFam Paired amphipathic helix protein SIN3 332 405 - -
Viun3g02966 1411 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Viun3g02966 1411 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Viun3g02966 1411 MobiDBLite consensus disorder prediction 989 1038 - -
Viun3g02966 1411 SUPERFAMILY PAH2 domain 338 403 IPR036600 GO:0006355
Viun3g02966 1411 MobiDBLite consensus disorder prediction 931 1082 - -
Viun3g02966 1411 SMART hdac_interact2seq4b 488 588 IPR013194 -
Viun3g02966 1411 Pfam C-terminal domain of Sin3a protein 1125 1371 IPR031693 -
Viun3g02966 1411 Gene3D Paired amphipathic helix 333 405 IPR036600 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02966 Viun-Chr3 36067913 36079765 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02966 28 119 WRKY Transcription Factor Family AT4G12020 61.702 1.75e-25 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g02966 Sin3a_C 4.5e-58 No_clan