Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02960 ATGAGTCAAGGTGGGAAAAATATGACAAAACTGGAAGCCGTGGAATACATAAAAAAAGTGCAAAAGAAATTTAAAGACAAGAAGGAAACGTTCGAGGAGTTTTTGAATGTCATGACCGATTATAGACAACATAGAATGGATGTTGGCACTGTAGTAGAAAAAGTGGAGGAGATTCTTAAAGACCACGATGATCTCATTTCGGGATTCAACAAGTTTTTGCCAAAGGGATATGAAATCCTTCTTCCACCTAAGGACACAGTTCAGTTGAAAGATGCTATCAAATATGTGCAGAAGATTAAGGATCGATTTCAAAACACAGATAGAATCTACAAGAGATTTGTAAGGATATTAACCAATAGGGACAAAAATGACATGTCTGCTAGTGAAATATTCCATAAGGTTGAAAAACTTTTTGAGGGTCACCATGATCTTGTTCGTGATTTCACTCTGTTTTTGCCAGATGCGTAA 468 0.3632 MSQGGKNMTKLEAVEYIKKVQKKFKDKKETFEEFLNVMTDYRQHRMDVGTVVEKVEEILKDHDDLISGFNKFLPKGYEILLPPKDTVQLKDAIKYVQKIKDRFQNTDRIYKRFVRILTNRDKNDMSASEIFHKVEKLFEGHHDLVRDFTLFLPDA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02960 155 PANTHER SIN3B-RELATED 11 155 IPR039774 GO:0003714
Viun3g02960 155 SUPERFAMILY PAH2 domain 7 75 IPR036600 GO:0006355
Viun3g02960 155 SUPERFAMILY PAH2 domain 83 154 IPR036600 GO:0006355
Viun3g02960 155 ProSiteProfiles PAH domain profile. 6 76 IPR003822 GO:0006355
Viun3g02960 155 Gene3D Paired amphipathic helix 91 153 IPR036600 GO:0006355
Viun3g02960 155 ProSiteProfiles PAH domain profile. 85 155 IPR003822 GO:0006355
Viun3g02960 155 Gene3D Paired amphipathic helix 12 74 IPR036600 GO:0006355
Viun3g02960 155 FunFam Paired amphipathic helix protein Sin3 12 74 - -
Viun3g02960 155 Pfam Paired amphipathic helix repeat 29 73 IPR003822 GO:0006355
Viun3g02960 155 Pfam Paired amphipathic helix repeat 109 152 IPR003822 GO:0006355
Viun3g02960 155 FunFam Paired amphipathic helix SIN3-like protein 84 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02960 Viun-Chr3 36021020 36021831 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02960 87 152 WRKY Transcription Factor Family AT4G12020 28.788 1.67e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun3g02960 PAH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02960 K11644 - var:108321439 263.077