Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02953 ATGTCGCCGGAAAGAGACATGATATCGGCGACGCCGGGAGCGTTCCGGCTGCGGTGGGACGTGTTCCTGAGCTTCAGAGGCACCGACACGCGCGGCACTATCACGAAAGGTCTGTACGAGAGTCTGCAGGCGCGTGGGGTTCGCGTGTTCCTGGACGACGAGGGGTTGGAGCGTGGGGAAGCGGTAGCGAAGGGGCTGATGGAGGGAATTGATGACTCTGCAGCGTTCATTGTCATCATATCTCAAAACTACGCTTCTTCACACTGGTGTCTTGAGGAACTCACCAAGATTTGCGGCACCGGTAGGCTCCTCTTGCCCGTTTTCTACCGGGTCGACCCGTCGCAGGTCCGGCACGTGTCGGGTCCCTTCCGAGCGGGTTTCGAATCGCATGAAAAAAGGTTTGAGAAAAATACGGTTTCAAAGTGGAAGGAAGCTTTGAAGAAAGTCGGTGGAATTGCTGGTTGGGTTTTTAATCACAGTGAGGAAGATGATCTGATTCGGCGTTTGGTGCGAAGGGTGTTGAAAGAGTTGAGTAACACTCCTATGGGTGTGCCTGAGTTTGCAGTGGGGCTTGATGAACGTGTTGAGAAGGTGATGGAGGTTTTGCAAGTTCAATCCAACGGTGTCAAGGTTTTGGGGTTGTATGGGATGGGTGGGGTTGGTAAGACAACCCTGGCCAAGGCACTTTTCAATGCCCTTGTTAACCGTTTTGAGCATCGTTGCTTCATTTCCAACGTGAGACAAGTTTCATCAAAACACGATGGTTTGGTTTCCCTTCAAAGCAAAATCATTAAAGACCTTTTTCCTGGAGCAGGGTCTCCCTCCATCGCTGATGTCAATGTTGGTGTTTCTGCTATCAAAGGGAGAGTTGGTGAGAATCGAGTTTTGCTAGTCTTGGATGATGTTGATGAAGTGAAGCAGCTTGATGCTTTGATTGGTAAGAGGGAGTGGTTTTATGATGGAAGCTGTGTGATAATCACAACACGGGATACTAAAGTTCTGACACAGGATCATGTGAATGTGTCGTATGAAGTTAGAGAGTTGTATGCTTCTGAAGCTCGAGAGTTATTCAGTTACCATGCACTGAGAAGAAGTGAACCACCAGAAAATCTTCTGAGTCTGTCAGAGGAGATAATATCCCTGACGGGAAGAATGCCTTTGGCTCTGGAAGTGTTTGGTTCGTTTTTGTTTGGCAAGAGAAGGGAGGAGGAATGGGAGGATGCTGTGAAGAAGCTAAGGCTAATTCGCCCTCACCATCTTCAGGATGTGTTGAAGATAAGTTACGATGCTTTAGATGAAGAAGAGAAGTGTATATTCCTTGATATTGCTTGTTTGTTTGTACAAATGGAAATGAAGCGTGATGGTGTGATTGATGTGTTAAGAGGTTGTGGTTTTAGGGGTGAGATTGCTATCACGGTACTGGTGCAGAAATGCTTGATGAAAATCACTCCGGAGAATACTGTGTGGATGCATGATCAAATTAGAGACATGGGAAGGCAAATTGTTATGGATGAAAGCTTTGTGGATCCTGGTGCGCGAAGTAGACTGTGGGATCGAGCTCAAATCATGACTGTGTTGAAGGGTCACAAGGGAACTAGATGCGTTCAAGGTATTGTGCTTGATTTTGAGGAAGAAAGGTTTTATAAGGGAAAGGTTGGATCAGTTTTTCCGAAGAAGCTTCAATGGAGATCGTGTTTAAGAAATATATCCTGCTACATCAAACAATGCCTTAAGAATCATCTTGAACCTCAAGCAGAGGAAAACAAAGAGTTTGTACTACACGCGAAATCCTTTGAACCAATGGTTAATTTGAGACAGCTTCAGATCAACAATCTGAAATTACAGGGCAAGTTTCTTCCATCTGAATTAAAGTGGCTACAATGGCAAGGGTGTCCTTTAGAACGCATGCCTTTGAAATCTTGGCCACGAGAACTGGCTGTCCTTGATCTCAAAAACAGCAAGAAAATGGAAACCTTGTGGGGATGGAATGGTTACAACAAGGTGCCACAGAAGTTAATGGTCTTGAACCTCTCCTACTGCAACCAACTCACTGCTATACCTGATTTATCTGGGTGTCAATGTCTAGAGAAGATTGATTTGGAGAACTGCATTAATCTAACTAAGATTCATGAATCAATTGGCAGTTTGAGCACCTTGCGTAGTTTAAATTTAACACGTTGTTCAAGCCTTGTCAACCTTCCAATTGATGTCTCGGGGCTAAAACAACTAGAGAGTCTTTATCTTTCTGGCTGCTCCAAGTTAAAAGCATTGCCAGAAAACATTGGAATCCTGAATTCCTTGAAAGCACTTCAAGCTAATGACACTGCTATAGCAGAGTTGCCCCAGTCCATTTTTCGCCTCACGAAGCTTGAGCAGCTTGTTTTAGAAGGTTGCCGATATTTGAGAAGGCTACCTAATTCTCTAGGACACCTATGTTCTTTGCAAGAATTATCTCTATATCACTCTGGGTTAGAAGAATTACCTGAGTCTGTTGGATCGTTAGATAACCTTGAGACATTCAATTTGATGGGATGTGAATCTCTCACTGTAATTCCTGATTCTATAGGGAATCTCATGTCATTGACAGAACTTCTGGTTGATAGAACTGCAATTAAAGAACTCCCTACAACTGTTGGTTCTTTATCTTACCTGAGGGAATTATCAGTTGGAAACTGTAAACTTCTTACTCAATTGCCAAATTCAGTTAAAAGGTTGGCCTCAGTTGTTGAACTTCAGTTAGATGGAACAGCCATCACAAATTTGCCAGATGAGATTGGAGAGATGAAGCTACTGAGGATACTCAAGTTGATGAATTGTAAAAATCTTGAATACTTACCAGAATCTATTGGCCACCTAGCATCTCTTACTACATTGAACACGGTCAATGGAAATATCAAGGAATTGCCAGAATCCACTGGACGGCTAGAAAATCTTGTCAACTTAAGATTGAACAAATGCAAAATGCTCAGAAAGCTTCCAGCTTCTATAGGAGATTTGAAATCTCTATATCATTTTTTCATGGAGGAAACAGCTGTGTCAAGCTTACCTGAAAGCTTTGGGATGCTGTCAAGCTTGAGAACATTGAAAATGGCAAAGAGGCCTGATTTACATACGGATGAAAGTAGCTTTCTTGCAGAACCTGAAGAGAACCATGGCCCTTTTATACTATCATCTTCCTTCTGCAATCTGACCTTGCTAACTGAGCTTGATGCCCGTGCATGGAAAATATCTGGGAAAATTCCTGATGAATTTGAGAAGTTGTCACTATTGGAGACTTTGAAATTAGACAGGAATGATTTTCACACCCTGCCTTCCAGTTTGAAGGGCCTTTCTATCCTCAAGGTCCTTTCACTGTCAAACTGCACTCAGCTGAACTCTCTCCCCTCACTTCCTTCAAGCCTGATTAATCTGAATGTTCAAAACTGTTCTTCAATAGAAACTATCCATGACATGTCAAATTTAGAGAGCCTGCAGGAGTTGAATCTCACAAACTGTGTAAAAGTGGGGGATATTCCTGGTCTTGAAAGCTTGAAGTCCTTGAGAAGGTTGTACCTAAGTGGTTGCATTGCATGCTCCTCACAAATACGCAAGAGACTTTCGAAGGTTGCACTGAGGAATTTACAGAACTTAAGCATGCCAGGAAGCAAATTACCTGAATGGTTTTCTGGACAAACAGTGAGCTTTTCCAAGCGTAAAAATCTTGAGCTAAAGAGTGTACTTGTTGGTGTTATTGTTTCAATCAACCATAGCATTGACATACCCAACATGAAGAGAGATGATATGCCAGGCTTGATTGATGTTCAAGCAAATATTCTCAAAGGGGACAGAACTCTGTTTAGTACTGTGTTAAACATCTGTGGGGTGCCTAGGACAGATGAAGAACACATGCACTTGTGTAAGTTCCATGATTATCATCAGTTGGTAGCCTTTTTAAAAGATGCTGACACATTTTGTGTGAGCAAGAGAAATCCACCTTTTGATAAGGGGTTGGAGTTAAGAAAATGTGGGGTTTATTTAATCTTTGAAGGAGATGATGATTATGATGGAGGGGAAGAATCATTGGACAAAGGCCTACAATCTGTTTCAGAAAAATTGGCCAATTTTTTCAGCACTTCTGAAGATGAGGTGAGTGTCAATGGAATTGGAATTGGACATGCTGGAACATGA 4167 0.4279 MSPERDMISATPGAFRLRWDVFLSFRGTDTRGTITKGLYESLQARGVRVFLDDEGLERGEAVAKGLMEGIDDSAAFIVIISQNYASSHWCLEELTKICGTGRLLLPVFYRVDPSQVRHVSGPFRAGFESHEKRFEKNTVSKWKEALKKVGGIAGWVFNHSEEDDLIRRLVRRVLKELSNTPMGVPEFAVGLDERVEKVMEVLQVQSNGVKVLGLYGMGGVGKTTLAKALFNALVNRFEHRCFISNVRQVSSKHDGLVSLQSKIIKDLFPGAGSPSIADVNVGVSAIKGRVGENRVLLVLDDVDEVKQLDALIGKREWFYDGSCVIITTRDTKVLTQDHVNVSYEVRELYASEARELFSYHALRRSEPPENLLSLSEEIISLTGRMPLALEVFGSFLFGKRREEEWEDAVKKLRLIRPHHLQDVLKISYDALDEEEKCIFLDIACLFVQMEMKRDGVIDVLRGCGFRGEIAITVLVQKCLMKITPENTVWMHDQIRDMGRQIVMDESFVDPGARSRLWDRAQIMTVLKGHKGTRCVQGIVLDFEEERFYKGKVGSVFPKKLQWRSCLRNISCYIKQCLKNHLEPQAEENKEFVLHAKSFEPMVNLRQLQINNLKLQGKFLPSELKWLQWQGCPLERMPLKSWPRELAVLDLKNSKKMETLWGWNGYNKVPQKLMVLNLSYCNQLTAIPDLSGCQCLEKIDLENCINLTKIHESIGSLSTLRSLNLTRCSSLVNLPIDVSGLKQLESLYLSGCSKLKALPENIGILNSLKALQANDTAIAELPQSIFRLTKLEQLVLEGCRYLRRLPNSLGHLCSLQELSLYHSGLEELPESVGSLDNLETFNLMGCESLTVIPDSIGNLMSLTELLVDRTAIKELPTTVGSLSYLRELSVGNCKLLTQLPNSVKRLASVVELQLDGTAITNLPDEIGEMKLLRILKLMNCKNLEYLPESIGHLASLTTLNTVNGNIKELPESTGRLENLVNLRLNKCKMLRKLPASIGDLKSLYHFFMEETAVSSLPESFGMLSSLRTLKMAKRPDLHTDESSFLAEPEENHGPFILSSSFCNLTLLTELDARAWKISGKIPDEFEKLSLLETLKLDRNDFHTLPSSLKGLSILKVLSLSNCTQLNSLPSLPSSLINLNVQNCSSIETIHDMSNLESLQELNLTNCVKVGDIPGLESLKSLRRLYLSGCIACSSQIRKRLSKVALRNLQNLSMPGSKLPEWFSGQTVSFSKRKNLELKSVLVGVIVSINHSIDIPNMKRDDMPGLIDVQANILKGDRTLFSTVLNICGVPRTDEEHMHLCKFHDYHQLVAFLKDADTFCVSKRNPPFDKGLELRKCGVYLIFEGDDDYDGGEESLDKGLQSVSEKLANFFSTSEDEVSVNGIGIGHAGT 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02953 1388 Gene3D - 348 432 IPR042197 -
Viun3g02953 1388 Pfam NB-ARC domain 193 414 IPR002182 GO:0043531
Viun3g02953 1388 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 155 IPR035897 -
Viun3g02953 1388 Gene3D - 176 343 IPR027417 -
Viun3g02953 1388 SMART till_3 18 152 IPR000157 GO:0007165
Viun3g02953 1388 SMART LRR_typ_2 905 928 IPR003591 -
Viun3g02953 1388 SMART LRR_typ_2 858 881 IPR003591 -
Viun3g02953 1388 SMART LRR_typ_2 952 975 IPR003591 -
Viun3g02953 1388 SMART LRR_typ_2 740 762 IPR003591 -
Viun3g02953 1388 SMART LRR_typ_2 811 834 IPR003591 -
Viun3g02953 1388 SMART LRR_typ_2 764 787 IPR003591 -
Viun3g02953 1388 SMART LRR_typ_2 1087 1109 IPR003591 -
Viun3g02953 1388 ProSiteProfiles TIR domain profile. 17 177 IPR000157 GO:0007165
Viun3g02953 1388 SUPERFAMILY L domain-like 895 1219 - -
Viun3g02953 1388 SUPERFAMILY L domain-like 489 914 - -
Viun3g02953 1388 Gene3D - 17 175 IPR035897 -
Viun3g02953 1388 Gene3D Ribonuclease Inhibitor 1046 1257 IPR032675 -
Viun3g02953 1388 ProSiteProfiles Leucine-rich repeat profile. 671 693 IPR001611 GO:0005515
Viun3g02953 1388 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 807 IPR044974 GO:0006952
Viun3g02953 1388 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 442 IPR027417 -
Viun3g02953 1388 Gene3D Ribonuclease Inhibitor 758 1044 IPR032675 -
Viun3g02953 1388 SMART LRR_CC_2 740 773 IPR006553 -
Viun3g02953 1388 SMART LRR_CC_2 881 908 IPR006553 -
Viun3g02953 1388 SMART LRR_CC_2 692 719 IPR006553 -
Viun3g02953 1388 SMART LRR_CC_2 1154 1183 IPR006553 -
Viun3g02953 1388 SMART LRR_CC_2 928 955 IPR006553 -
Viun3g02953 1388 Gene3D Ribonuclease Inhibitor 566 757 IPR032675 -
Viun3g02953 1388 PRINTS Disease resistance protein signature 382 396 - -
Viun3g02953 1388 PRINTS Disease resistance protein signature 211 226 - -
Viun3g02953 1388 PRINTS Disease resistance protein signature 289 303 - -
Viun3g02953 1388 PRINTS Disease resistance protein signature 714 730 - -
Viun3g02953 1388 Pfam TIR domain 19 181 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02953 Viun-Chr3 35849265 35855147 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02953 788 981 WRKY Transcription Factor Family AT4G12020 32.821 4.02e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02953 - - gmx:100786934 2145.55