Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02952 ATGAAGGGATGGGATGGGATTCAATCTTCTTTATCTTCTCGATCGAGTTCCACGTTGGGTCATCAAGCTTCCTCTCGATCTGTTCGACTCGGCCGAGTTCAGCCTCAGGCTCCGACTCACCGCACCATCTTCTGCAACGATCGCGAGGCCAATTTTCCTATCCGATTCAAGGGGAATTCTATATCAACCACCAAATATAACTTCTTCACCTTTTTGCCAAAAGGATTATTTGAGCAGTTCAGACGAGTGGCTAATCTCTACTTTCTTACAATCTCAATTTTGTCAACCACACCTATTAGTCCGGTGTCTCCAATAACTAATGTGGTTCCTCTGTCTCTGGTGCTTCTTGTCTCTCTTATCAAGGAAGCTTTTGAGGATTGGAAGCGTTTTCAAAATGACATGTCCATAAACAATAATGGTATAGAAGTTTTGCAAGATCAAAAGTGGCAGTCTATATCCTGGAAAAAGTTGCAGGTTGGAGACATTGTGAAGGTTAATCAGGATGGATTCTTTCCTGCTGATCTGCTTTTCTTGGCAAGCACTAATGCAGATGGTGTCTGCTACATTGAGACTGCTAACTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTATGTGACTCCAGAGAAGGCATCTGAGTTTAAAGGTGAAATTCAATGCGAACAACCAAACAATTCATTGTATACCTTTACTGGAAATCTTATCACCCAAAAGCAAACATTACCTCTCAGTCCAAATCAAGTTTTGTTGCGGGGTTGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTTATATTTACAGGACATGAAACAAAGGTGATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGAAAGCTTGACAAGCTCATACTAACTTTATTTGCAACTCTTTTCATGATGTGTTTCATTGGAGCCATAGGCAGTGCTGTCTTCGTAAATAAAAAATATTTTTACTTACATCTTGATTCATCAGAAGAGGGCTCGGCACAGTTCAACCCCAGAAATAGATTTTTGGTTTTTATTCTGACTATGTTTACCCTAATCACACTATACTCAACAATCATTCCCATTTCACTTTATGTGTCCATAGAGATGATAAAATTTATTCAATCAACTCAATTTATCAACAAAGACTTGTCCATGTACCATGCTGAAACAAATACACCTGCATTAGCCAGAACTTCAAATTTGAATGAAGAACTTGGGCAGGTGGAATATATTTTCTCTGATAAAACTGGAACTCTAACAAGAAATTTAATGGAGTTCTTCAAGTGTTCGATTGGAGGAGAGGTCTATGGAAATGGTGTGACTGAAATTGAGAGAGGAGTAGCAGAGCGCAGTGGCATGAAGATTGAGGAAAATATTTCTTCGAAAGCAGTGCAAGAGAGAGGTTTTAATTTTGATGATGATAGGCTTATGAGAGGAGCTTGGAGGAATGAGCCTAATCCTGATGTTTGCAAGGAATTCTTCAGATGCCTTGCTATATGCCATACTGTACTGCCAGAGGGTGATGAATCCCCTGAAAAGATCAGATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTTATTGCTGCCAAAAACTTTGGTTTCTTTTTCTACAGACGGACACCTACAATGATATATGTTCGTGAATCTCATGTTGAGAAAATGGGCAAAATTCAAGACGTGTCTTATGAGATTTTAAATGTGCTTGAGTTTAATAGTACAAGGAAGCGTCAGTCTGTTGTTTGCCGTTATCCTGATGGAAGGCTTGTGCTATACTGTAAGGGTGCTGATAATGTAATCTATGAGAGACTGGCTGATATTAGTAATAGTATCAAGAAAGTCACTAGGGAGCATTTGGAACAATTTGGATCTGCCGGACTTCGCACATTATGCTTAGCTTACAAAGAATTGCATCCTGATGTTTATGAAAGCTGGAATGAGAAGTTTATCCAGGCCAAGTCTTCTCTAAATGATCGTGAAAAGAAATTGGATGAGGTGGCAGAACTTATCGAAAATGATCTCATTTTAATTGGTAGCACAGCCATAGAAGACAAGCTTCAAGAGGGTGTACCTGCTTGCATAGAGACTCTTCAAAGAGCTGGTATTAAAATTTGGGTTCTTACAGGGGACAAGATTGAAACAGCTATAAACATAGCCTATGCATGCAACTTGATAAACAATGAGATGAAGCAATTTGTGATTAGTTCAGAAACTGATGCAATTAGAGAAGTTGAAGAAAGGGGTGACCAAGTGGAGATTGCACGGTTTATCAAAGAAGAAGTGAAAAAAGAGCTGAAGAAATGCCTTGAGGAAGCACAGAACTATTTTGACTCCCTATCTGGACCAAAATTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCATTGGATCCAAGTTTAAGAGTGATGCTGCTCAACATAAGTTTGAATTGTCATTCTGTTGTTTGCTGTCGAGTTTCTCCTTTACAAAAAGCACAGGTCACAAGTATGGTTAAGAAAGGTGCTCACAAAATAACACTTAGTATTGGTGACGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGCATAAGTGGGTTGGAGGGAATGCAAGCTGTGATGGCCAGCGATTTTGCCATTGCACAGTTTCGTTACCTTACAGACTTGCTTCTTGTTCATGGAAGATGGTCTTATTTGCGAGTTTGCAAGGTTGTCTTATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTCTGGTTTACGTTTCAAACTGGATTTTCTGGTCAGAGATTCTATGATGATTGGTTTCAGTCATTATATAATGTTATCTTCACAGCCCTACCTGTAATCATTGTTGGATTATTTGACAAGGATGTCAGTTCATCTCTATCCAAGAAGTATCCTGAACTATACATGGAAGGAATAAGAAATGTTTTCTTTAAATGGAAAGTTGTGGCAATATGGGCATTCTTTTCTATTTACCAATCTCTAATATTCTTCTATTTTGTGAGTACAACAAATTTAAGTGCTAAAAACTCAGCAGGCAAGATCTTTGGATTATGGGATGTCAGTACAATGGCCTTCACTTGTGTTGTAATAACCGTCAACTTGCGACTGCTTATGATTTGTAATTCCATCACTAGATGGCACTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTATTTTTATTTTTATATATTCAGGGATTAGCACTCCTTATGATCGTCAGGAAAATATTTATTTTGTCATATACGTTTTGATGAGTACGTTTTACTTCTATGTCATGCTACTTCTAGTTCCTGTTGCTGCACTTTTCTGCGACTTTGTTTACCAAGGGGTTCAAAGATGGTTCTCCCCCTATGATTATCAGATTGTTCAAGAAATGCATAGAGATGAGCTAGATAACACTGGAAGGGCACAGTTGTTGGAGATAGGGAACCAGCTTACACCAGCTGAGGCAAGGAGTTATGCAATATCTCAACTCCCACGTGAGCTATCAAAGCACACCGGGTTCGCTTTTGATTCACCTGGGTACGAATCCTTTTTTGCCGCACAGCTTGGTGTATATGCCCCACCTAAGGCATGGGATGTTGCTAGACGAGCCAGTATGAGAACCAAGCCCAAGATTGGGCACAAGAAGTAA 3675 0.3927 MKGWDGIQSSLSSRSSSTLGHQASSRSVRLGRVQPQAPTHRTIFCNDREANFPIRFKGNSISTTKYNFFTFLPKGLFEQFRRVANLYFLTISILSTTPISPVSPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMSINNNGIEVLQDQKWQSISWKKLQVGDIVKVNQDGFFPADLLFLASTNADGVCYIETANLDGETNLKIRKALEKTWDYVTPEKASEFKGEIQCEQPNNSLYTFTGNLITQKQTLPLSPNQVLLRGCSLRNTEYIVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILTLFATLFMMCFIGAIGSAVFVNKKYFYLHLDSSEEGSAQFNPRNRFLVFILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQFINKDLSMYHAETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEVYGNGVTEIERGVAERSGMKIEENISSKAVQERGFNFDDDRLMRGAWRNEPNPDVCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVIAAKNFGFFFYRRTPTMIYVRESHVEKMGKIQDVSYEILNVLEFNSTRKRQSVVCRYPDGRLVLYCKGADNVIYERLADISNSIKKVTREHLEQFGSAGLRTLCLAYKELHPDVYESWNEKFIQAKSSLNDREKKLDEVAELIENDLILIGSTAIEDKLQEGVPACIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDAIREVEERGDQVEIARFIKEEVKKELKKCLEEAQNYFDSLSGPKLALVIDGKCLMYALDPSLRVMLLNISLNCHSVVCCRVSPLQKAQVTSMVKKGAHKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLTDLLLVHGRWSYLRVCKVVLYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSSSLSKKYPELYMEGIRNVFFKWKVVAIWAFFSIYQSLIFFYFVSTTNLSAKNSAGKIFGLWDVSTMAFTCVVITVNLRLLMICNSITRWHYISVGGSILAWFIFIFIYSGISTPYDRQENIYFVIYVLMSTFYFYVMLLLVPVAALFCDFVYQGVQRWFSPYDYQIVQEMHRDELDNTGRAQLLEIGNQLTPAEARSYAISQLPRELSKHTGFAFDSPGYESFFAAQLGVYAPPKAWDVARRASMRTKPKIGHKK 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02952 1224 Gene3D - 550 684 IPR023299 GO:0000166
Viun3g02952 1224 Gene3D - 685 892 IPR023214 -
Viun3g02952 1224 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 485 690 IPR023299 GO:0000166
Viun3g02952 1224 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 35 1179 - -
Viun3g02952 1224 MobiDBLite consensus disorder prediction 1 34 - -
Viun3g02952 1224 SUPERFAMILY Calcium ATPase, transmembrane domain M 55 1129 IPR023298 -
Viun3g02952 1224 FunFam Phospholipid-transporting ATPase 529 684 - -
Viun3g02952 1224 SFLD p-type atpase 403 903 IPR044492 -
Viun3g02952 1224 FunFam Phospholipid-transporting ATPase IC 418 430 - -
Viun3g02952 1224 FunFam Phospholipid-transporting ATPase 117 286 - -
Viun3g02952 1224 SUPERFAMILY HAD-like 409 894 IPR036412 -
Viun3g02952 1224 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Viun3g02952 1224 Pfam Cation transport ATPase (P-type) 518 613 - -
Viun3g02952 1224 Pfam E1-E2 ATPase 141 377 - -
Viun3g02952 1224 SFLD C1.7: P-type atpase like 403 903 - -
Viun3g02952 1224 Gene3D - 121 286 - -
Viun3g02952 1224 CDD P-type_ATPase_APLT_Dnf-like 58 1012 - -
Viun3g02952 1224 MobiDBLite consensus disorder prediction 1 32 - -
Viun3g02952 1224 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Viun3g02952 1224 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Viun3g02952 1224 NCBIfam HAD-IC family P-type ATPase 824 931 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun3g02952 1224 SUPERFAMILY Calcium ATPase, transduction domain A 141 282 IPR008250 -
Viun3g02952 1224 Pfam Phospholipid-translocating P-type ATPase C-terminal 880 1130 IPR032630 -
Viun3g02952 1224 Coils Coil 767 787 - -
Viun3g02952 1224 Pfam Phospholipid-translocating ATPase N-terminal 43 107 IPR032631 -
Viun3g02952 1224 FunFam Phospholipid-transporting ATPase 685 892 - -
Viun3g02952 1224 NCBIfam phospholipid-translocating P-type ATPase 56 1138 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02952 Viun-Chr3 35812470 35838781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02952 7 1223 Primary Pumps ATPases AT1G59820 79.310 0.0 2069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02952 K14802 - gmx:100815547 2310.03