Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02929 ATGGCTGGTGAGAAGCTTAATGGGGGTTCAAGCATGACGCTTCTACTCCAAAAAGAAACGCTTCCATGCTCCCCTGACCATATCCAAACCTTCTGGGTTCAAAACTCTGAACCTTCTTTCCAAGGCTCAAAATCCTCGGTTAATGTTGTGAATGTGAGGGATAGACCCTTCTTCCGAGGGGTTGAGAGAGAAGAAAACGAAGATGATGAAGATTTTGAGGTATTCCCCCATCAACCCGGTAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGTAACTTCGAGGTGGAAAACAAGCTTGAACCCGAAAGGAAGGTCCAACTTGCAAAGGAACTTGGCATGCAACCAAGGCAAGTGGCCATATGGTTCCAAAACCGTAGGGCAAGGTTCAAGACCAAACAACTAGAAAAAGACTATGGCATACTGAAAGCTCGCTATGACATTCTCAGAAGGGACTATGACAATCTCGTTCAAGAGAATGACAAACTCAAGGAAGAGGTTTATTCTCTGATGAAGGTGATTCCCAGTGAGAAAGAGGAACAGAATTTGGATGATACCAGCTGTGGTGCTGTCAACTCAGAGCATAAAGAGCAGACGGATATGATCATAAATGGAGGTTCTGAAAATGAATCCAAAGTGACACTTCCTGTTATGGAAATAATCAAACAGAAAGATGCAAATTCAGCTAAAAGTGACGTGCTTGATTCGGAGAGCCCACATTTCACCGATGGAAACCAATCCTCACTCTTTGAGCCTGCAGATTCCTCTCATGCTCTGGAACCAGACCACTCGGATTTCTCACAGGACGAGGAAGACATCCTCAGCCAAAACATGCCACTCCTACCAAAGTTTGAAGTTGAATATGTCTGCTATGATGAACCACCCGAAAATCCTTTCACGTTCCGGTTCCCAGTAGAAGATCAAACCTTCTGTTTTTGGTCTTGTTAA 957 0.442 MAGEKLNGGSSMTLLLQKETLPCSPDHIQTFWVQNSEPSFQGSKSSVNVVNVRDRPFFRGVEREENEDDEDFEVFPHQPGKKRRLTSEQVQFLESNFEVENKLEPERKVQLAKELGMQPRQVAIWFQNRRARFKTKQLEKDYGILKARYDILRRDYDNLVQENDKLKEEVYSLMKVIPSEKEEQNLDDTSCGAVNSEHKEQTDMIINGGSENESKVTLPVMEIIKQKDANSAKSDVLDSESPHFTDGNQSSLFEPADSSHALEPDHSDFSQDEEDILSQNMPLLPKFEVEYVCYDEPPENPFTFRFPVEDQTFCFWSC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02929 318 MobiDBLite consensus disorder prediction 231 273 - -
Viun3g02929 318 FunFam homeobox-leucine zipper protein ATHB-6-like 84 130 - -
Viun3g02929 318 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Viun3g02929 318 CDD homeodomain 79 137 IPR001356 GO:0003677
Viun3g02929 318 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Viun3g02929 318 PRINTS Lambda-repressor HTH signature 116 132 IPR000047 GO:0003677
Viun3g02929 318 PRINTS Lambda-repressor HTH signature 107 116 IPR000047 GO:0003677
Viun3g02929 318 Pfam Homeodomain 81 134 IPR001356 GO:0003677
Viun3g02929 318 Pfam Homeobox associated leucine zipper 136 174 IPR003106 GO:0006355|GO:0043565
Viun3g02929 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 67 225 IPR045224 GO:0003700
Viun3g02929 318 SUPERFAMILY Homeodomain-like 71 138 IPR009057 -
Viun3g02929 318 MobiDBLite consensus disorder prediction 235 256 - -
Viun3g02929 318 Gene3D - 76 141 - -
Viun3g02929 318 Coils Coil 149 176 - -
Viun3g02929 318 SMART HOX_1 78 140 IPR001356 GO:0003677
Viun3g02929 318 MobiDBLite consensus disorder prediction 259 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02929 Viun-Chr3 35490993 35492937 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02929 31 185 Homeobox Transcription Factor Family AT3G01470 52.532 1.40e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun3g02929 Homeodomain 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02929 - K09338 gmx:100804328 479.944