Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02913 ATGGCGATCGGAAAGAAGCTTTTTGTTATTCTGTTTTCTCTGGCAGTGTTAATCCCTACCCTGAACGCCAATTCCTTGGAGAAAGATGGGTATTGGAAGAGCCATTCGAACGAGTTTGATACATACTGGCAGACAAGAGCAGAAGAGGCTGCAAAGGACAATAAAGCAGCATACTTTAAAGATCCATATTCAGTCTCCGGAAACTTCACTTCCTCAGTTAGCGAGCTTATAATTGGGAAGGATAAGCGAAGGAACTTGAAGGGAAAGAAAAATCATGACGGTCCATGCATGGCGACCAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAACTGGGCGGACAACAGGATGAAGCTTGCAGATTGTGTTCAGGGCTTTGGAAGAAACACTGTGGGAGGAAAGGGTGGTAAATATTACGTGGTAACAGATTCTTCAGATGAAAACATGGTTGACCTAAAGCCAGGAACTCTCCGGCATGCGGTTACACGTGACGGCCCATTGTGGATCATCTTCGAACGCAGCATGGTGATCACCCTGAAGCAGGAGCTCATCATGACCAGCAACAAGACCATTGATGGAAGAGGCGTCGATGTGTACATTTCCGGCGGTGCTGGCTTCACCCTCCAGTCCATCAACAACGTCATCATCCATGGAATTAAGGTCTACGACATTTCTGCTCATGGTGGTGGGATGATCAGAGATTCTGAGACCCATTACGGGTTCAGGACTCAGAGTGATGGAGATGGCATTTCCATCTTTGGTTCTAGCAACATCTGGGTGGATCATGTCTCGATGAGAAACTGCTACGATGGACTTATCGATGTAATCATGGGATCCACCGCCATTACGATTTCCAACAGCCATTTCACCGACCACAACGAGGCGATGCTGTTCGGTGCCAGCGACGGCTACGACCTTGATAAGATCATGCAGGTGACCCTGGCATTCAACCACTTCGGGAAGAGATTGATTCAGAGGATGCCGAGATGCAGACATGGTTTCTTCCATGTGGTTAACAACGATTACACTCACTGGGAAATGTATGCGATTGGTGGGAGCAAGAACCCTACCATCATCAGCGAGGGTAACAGATTCATTGGCCCTGACGACATTAATGCTAAGCAGATCACAAAGAGAGAATACTCTCCCGAGAGCGTGTGGTCAGCATGGCAGTGGAGATCAATTAACGATGAGTACATGAACGGAGCATATTTCGTTCAATCTGGGCCTGAGCTTGTTAACAGGCCATTCTCAAGGTTCGACATGATCAAAGCCAAGCCAGGAACTTACGTCGCAAGGCTTACACGCTATGCTGGAAGCCTTAAGTGCAGAGAGGGTAAACCTTGCTAA 1350 0.48 MAIGKKLFVILFSLAVLIPTLNANSLEKDGYWKSHSNEFDTYWQTRAEEAAKDNKAAYFKDPYSVSGNFTSSVSELIIGKDKRRNLKGKKNHDGPCMATNPIDRCWRCDPNWADNRMKLADCVQGFGRNTVGGKGGKYYVVTDSSDENMVDLKPGTLRHAVTRDGPLWIIFERSMVITLKQELIMTSNKTIDGRGVDVYISGGAGFTLQSINNVIIHGIKVYDISAHGGGMIRDSETHYGFRTQSDGDGISIFGSSNIWVDHVSMRNCYDGLIDVIMGSTAITISNSHFTDHNEAMLFGASDGYDLDKIMQVTLAFNHFGKRLIQRMPRCRHGFFHVVNNDYTHWEMYAIGGSKNPTIISEGNRFIGPDDINAKQITKREYSPESVWSAWQWRSINDEYMNGAYFVQSGPELVNRPFSRFDMIKAKPGTYVARLTRYAGSLKCREGKPC 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02913 449 SUPERFAMILY Pectin lyase-like 100 439 IPR011050 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Viun3g02913 449 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Viun3g02913 449 SMART amb_all 174 371 IPR002022 -
Viun3g02913 449 Pfam Pectate lyase 182 365 IPR002022 -
Viun3g02913 449 PANTHER PECTATE LYASE 18-RELATED 52 447 IPR045032 GO:0030570
Viun3g02913 449 Gene3D - 99 442 IPR012334 -
Viun3g02913 449 Pfam Pectate lyase, N terminus 38 86 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02913 Viun-Chr3 35215052 35216832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02913 1 449 Polysaccharide Lyase AT1G14420 56.774 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02913 K01728 - gmx:100798579 725.702