Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02912 ATGGAGCTTGCACCAGTGAAATCTGAACTGAGCCCAAGAAGCCATAGGTTGCTCGTTATAGATGGTAGTGAGGTTGCTAAGTGTGTCAAAAGGAGGCGAAGAGGTTCGTCTATGTCAGTGTTAGGTGGCAATGAACAACATGGTGAAAAGTTAGAAGAACATAAACAACTTGGTACTGCCACCACTGTTAAGAGAAGTTCAAGGTTCAGGGGTGTTAGCAGACACAGGTGGACTGGGAGGTTTGAAGCACATCTATGGGATAAAGGGACATGGAATCCCACTCAGAAGAAGAAAGGAAAGCAAGTATATTTGGGAGCTTATAATGATGAAGAAGCAGCTGCTAGAGCTTATGATTTGGCTGCACTCAAGTACTGGGGAATATCAACTTTCACAAATTTTCCTGTGTCTGACTATGAGAAAGAAATTGAGATAATGAAAACAGTAACCAAAGAAGAATATCTTGCTTCACTGAGAAGGAGGAGCAGTGGTTTTTCGAGAGGTGTATCAAAGTATAGAGGAGTAGCAAGGCATCATCACAATGGAAGATGGGAAGCAAGAATTGGGAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACTTACAGTACACAAGAAGAAGCAGCTCGTGCATATGACATTGCAGCAATTGAGTACAGAGGTATAAATGCTGTGACAAACTTTGACTTGAGCTCCTACATCAGATGGCTAAGACCAGGAACACATGATCAAAAGCCTGGCACAGATCCTCAACCCTTTGCTACCTCTAACTCAATGCAAACAAGAGGGAACATTGAGGTATCCAACTCTAACATGAATTCATTCTCCTCACCTGAATTGGACAGTACCAAGAAGCAAGACTTTTCCAAGTATATCAACCCTTTGAGTCCTTGCAACAAGCCATCTTCCCCAACAGCATTAGGACTTCTCCTAAAATCAACAGTATTCAGAGAATTGATGCAGAGAAATCTGAACTCCTCTAGTGAGGAAGCTGAAGAAGTTGAATTCAAATACCCACAAGAAGGAAATGGAGTGACATATTACAGTGACAACACCAGTAACTCTTACTTTTGCTCTTCTGATATCAACACATTACCAAACCTGGAGTCACCAGAAGAGAGTTCATTGCCTATGTATCATGGAACTGTGCAATCCCTGTGGAATAGTTCTTTCAACATCTCTAACTGA 1185 0.4203 MELAPVKSELSPRSHRLLVIDGSEVAKCVKRRRRGSSMSVLGGNEQHGEKLEEHKQLGTATTVKRSSRFRGVSRHRWTGRFEAHLWDKGTWNPTQKKKGKQVYLGAYNDEEAAARAYDLAALKYWGISTFTNFPVSDYEKEIEIMKTVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSSYIRWLRPGTHDQKPGTDPQPFATSNSMQTRGNIEVSNSNMNSFSSPELDSTKKQDFSKYINPLSPCNKPSSPTALGLLLKSTVFRELMQRNLNSSSEEAEEVEFKYPQEGNGVTYYSDNTSNSYFCSSDINTLPNLESPEESSLPMYHGTVQSLWNSSFNISN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02912 394 FunFam AP2-like ethylene-responsive transcription factor 67 136 - -
Viun3g02912 394 ProSiteProfiles AP2/ERF domain profile. 68 134 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 PRINTS Ethylene responsive element binding protein signature 210 230 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 298 - -
Viun3g02912 394 FunFam AP2-like ethylene-responsive transcription factor 169 230 - -
Viun3g02912 394 SUPERFAMILY DNA-binding domain 67 136 IPR016177 GO:0003677
Viun3g02912 394 CDD AP2 169 230 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 MobiDBLite consensus disorder prediction 36 60 - -
Viun3g02912 394 SMART rav1_2 68 140 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 SMART rav1_2 170 234 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Viun3g02912 394 Gene3D AP2/ERF domain 67 136 IPR036955 GO:0003700|GO:0006355
Viun3g02912 394 Gene3D AP2/ERF domain 169 230 IPR036955 GO:0003700|GO:0006355
Viun3g02912 394 Pfam AP2 domain 67 126 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 Pfam AP2 domain 169 220 IPR001471 GO:0003700|GO:0006355
Viun3g02912 394 ProSiteProfiles AP2/ERF domain profile. 170 228 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02912 Viun-Chr3 35194228 35196444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02912 64 279 AP2-EREBP Transcription Factor Family AT5G57390 59.447 6.73e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun3g02912 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02912 - - gmx:100799621 697.197