Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02911 ATGATTTCCAGCCAAATTCACGTGTTTCGCTCTGCATTTCGCGTTCTCAGATATCCATTCACAAACTCACCAAACGCGCGTCCTTTGCTTTTGCTCCATCCCAACACAAACGCTTCCTTCTGCCCCTCACCAACCACCCTTTGTTCTTCACTCACTGACGACTCCTTTTCCACTCCAAAACCAAACCAGTTGGGCTACAATCCTTCAGAGGAACTGTTCGAGCTGGAGGAGGAGCTCAAACCAAGCAAGGGCAAGTCTCATGCACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTACCTTGTCCGAGTTGCCGAGCAAGGGGTTATACACCTTGTACAGAGTGTGGAATAGAAAGATCAAGACCAGACTGTCCAAAATGTTATGGAAAGGGTATATTGACTTGCCACCAATGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAAAAACCATGGGAGAGGGCCCATTCTATTTCCCCACTTAAAGTTAAGGAAGATGATGAAGTTGACAAATTAGAAATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAATCACCACCTCCAGAAGTTGGATTAAAGATTAGTCGTTCATTGAAAAGTCTGAATGCCAAAACTGGTCTGTTTAGCAACCGAATGAAGATTATTCACCAGGATCCCAAGCTTGAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCAAGGAGACACACTTCCAATACCATGAAAGCTTTCTTTAGTGATCCAATAAACCGACAGAAAAGGAGCATGGCCATGAAGGGAGTAAAATTCTACTGCAAAAACTGTGGACGTGAAGGACATAGGAGATACTACTGTCCAGAACTCAAGGATACCTTGATTGATCGGCGATTCATGTGTAGGGTCTGTGGGGAAAAGGGTCACAACAGAAGAACATGTAGAATGATAAGGGTAAGCCATAGCAATGAGAGAATGATAAAACAGAATCAGTGTAGGGTCTGTGGGGAAAAGGGCCACAACAGAAGAACTTGTTGGAAGTTAAGGATAAGCGGTAGAAATGGGAGAGTGATAAAACACCGCAAGTGTAAAGTATGTCACCAATTCGGCCATAACCGCAGAACCTGTCCTCAAGTTGTTCCTAGTAAAAGAAAAACGGTCTCTCGAAGGCAATACAAGTGTAGGTTGTGCAAGAAAAAGGGACATAACAGTAGGACATGTCCAAGTAAGACACATGTTACTGAACATCCTCAAGATTAA 1281 0.4403 MISSQIHVFRSAFRVLRYPFTNSPNARPLLLLHPNTNASFCPSPTTLCSSLTDDSFSTPKPNQLGYNPSEELFELEEELKPSKGKSHAPEPRSWFGPNGQYIRELPCPSCRARGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEKPWERAHSISPLKVKEDDEVDKLEIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLEAQRVAAIKKAKGTVAARRHTSNTMKAFFSDPINRQKRSMAMKGVKFYCKNCGREGHRRYYCPELKDTLIDRRFMCRVCGEKGHNRRTCRMIRVSHSNERMIKQNQCRVCGEKGHNRRTCWKLRISGRNGRVIKHRKCKVCHQFGHNRRTCPQVVPSKRKTVSRRQYKCRLCKKKGHNSRTCPSKTHVTEHPQD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02911 426 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 SUPERFAMILY Retrovirus zinc finger-like domains 278 323 IPR036875 GO:0003676|GO:0008270
Viun3g02911 426 MobiDBLite consensus disorder prediction 407 426 - -
Viun3g02911 426 ProSiteProfiles Zinc finger CCHC-type profile. 339 352 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 60 322 - -
Viun3g02911 426 ProSiteProfiles Zinc finger CCHC-type profile. 308 322 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 Gene3D - 277 324 - -
Viun3g02911 426 SUPERFAMILY Retrovirus zinc finger-like domains 390 422 IPR036875 GO:0003676|GO:0008270
Viun3g02911 426 Gene3D - 365 423 - -
Viun3g02911 426 SMART c2hcfinal6 400 416 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 SMART c2hcfinal6 369 385 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Viun3g02911 426 SUPERFAMILY Retrovirus zinc finger-like domains 358 390 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02911 13 384 C2H2 Transcription Factor Family AT5G20220 58.869 1.63e-150 431