Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02909 ATGGAAGTTAGCAATGAAGAAATCAACGGCGAGAAGGATCATAAGCTTGAAAGGGAAATGCCAGAGGTTGGAGAACTTTCATTGGTAAGGCTTGTAAAGGATTCAACTAGTGATGAAGAGAGTGAACTTGTCTCTCTCTCTCTTGGAATTTCATCTACAGGTAAACATGAGAAGAAGAATAGAACTGAAAAGGTCAGAGAAAATGAGGATTTGAAAGAAGGACTTTCACTCGGATTAGATATAAGATTTGAGCCTTCAGCTATAAAAAATCACAGCACTGAAAGTAGGTGTGATGGGGAAATGAAGGAAGAGGAACTCAGAGAGATATGGCCACCCAGTAAAGTTCTAAAGACGATGAGAACATGGGATAAAAGTGAAGCTTCTCAACATGCTGAAGTCAAGAAGGCTAGGGTTTGTGTCAGAGCTAGATGTGATAACCTTACGATGAATGATGGTTGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGGAATCCATGTCCCCGAGCATACTATCGATGCACTGTCTCTCCATCCTGTCCTGTGAAAAAACAGGTTCAAAGATGTGCGGAAGACATGTCAATATTGATTAGCACCTACGAAGGAACTCACAACCACCCTCTTCCTTCTTCAGCCACTACCATAGCCTACACAACTTCTGCTGCTGCATCCATGCTTCAATCTCCTTCATTGACCACACAACTAGCCAATTCAGATACCGTCCCTCTCATCAATTCTAGTGTTCTTTATAACCTTAATGCCCTAAACTTCACATCAAGCTATCACCACGTTTCAAAATCACCAACCTTATTCTTCCACAGATCCTCTATTTCTACCTCTAATTCTCACCCCACTGTCACTCTTGACCTTGCCACTCCTCAAACTTCACCTCACATTGGAAATTTCACCCCAAGTTTGTCTTTCATACCACAATATTCATCAACCAATAATGTTGATTTTTCCTCGAGTACTTTCTCTCCTTTGCAATCTAGTGTGCTACACTCACCTTGCTATGGTGATTTCTTCAACTATGAGGGATTGATCACCCCAAATAGAAACCATAACGGTTCCCTTATGAACACTGGAAAACAACCATTCCTGGGACATCTTTGTCGATCTAATAGTAATAACATTACCAACCATGCCATTTCTAAACAATCTTTACCTGATTCCATTGTAGCTGCATCCAAAGCAATCACCGCTACCCCAAAATATCAATCTGCTATATTAGCAGCTGCCCTCACCGCATATGCTGGTAATGGGGTAAGAGAGAATCATGAGGAGGCACAGAGTGCAGGTTTGGACTTAAATCTAGGTGGGGATGTGCCATACACAACCAACACAGTTTACCCTAATTCTAATGCATCAAGGTACAAGAGAATGTCACTTTCTGCTCCTACTGCTCCAAAAAGAAACTCGGTCCTATTTCAGCCATCACATAATGCATCTAAAAGTAACCTATTCTTAGACCAATAA 1479 0.4118 MEVSNEEINGEKDHKLEREMPEVGELSLVRLVKDSTSDEESELVSLSLGISSTGKHEKKNRTEKVRENEDLKEGLSLGLDIRFEPSAIKNHSTESRCDGEMKEEELREIWPPSKVLKTMRTWDKSEASQHAEVKKARVCVRARCDNLTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVSPSCPVKKQVQRCAEDMSILISTYEGTHNHPLPSSATTIAYTTSAAASMLQSPSLTTQLANSDTVPLINSSVLYNLNALNFTSSYHHVSKSPTLFFHRSSISTSNSHPTVTLDLATPQTSPHIGNFTPSLSFIPQYSSTNNVDFSSSTFSPLQSSVLHSPCYGDFFNYEGLITPNRNHNGSLMNTGKQPFLGHLCRSNSNNITNHAISKQSLPDSIVAASKAITATPKYQSAILAAALTAYAGNGVRENHEEAQSAGLDLNLGGDVPYTTNTVYPNSNASRYKRMSLSAPTAPKRNSVLFQPSHNASKSNLFLDQ 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02909 492 MobiDBLite consensus disorder prediction 1 21 - -
Viun3g02909 492 SMART WRKY_cls 149 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g02909 492 ProSiteProfiles WRKY domain profile. 144 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun3g02909 492 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 38 427 IPR044810 GO:0003700
Viun3g02909 492 Gene3D WRKY domain 134 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g02909 492 SUPERFAMILY WRKY DNA-binding domain 143 210 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun3g02909 492 FunFam probable WRKY transcription factor 31 134 211 - -
Viun3g02909 492 Pfam WRKY DNA -binding domain 150 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02909 Viun-Chr3 35165044 35169271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02909 35 295 WRKY Transcription Factor Family AT5G15130 49.819 5.82e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun3g02909 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02909 - - vum:124844927 836.639