Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02900 ATGGGAAGACAGAGTCCTGGAAAATGGATCAGAAACTTGCTTCTGGGGAAGAGATCGTCGTCAAAGTCCAAGTCTTCAAGAGAGAAAGATATTTATAAACCTTTAAGTAACAAGGATGTTCTGGTGGTGTCTTCGGAGACATCAATGTCCTCTTCTATATCTGGTGCAAATGCTATTAAAGGAAAGCTATCAGAAAAGGAAGTAATTAGTGTATCATCAAACGATGGGGTAATTCTTGAAAATGAAGTTGAGCAGGCCAATGGAAAGTCTCTTGATGATTTTTGTTCTGAGGAACATAATGAGAAAAGCAGGCTAATAAAAACAGCAATAACAATTCAGGCTGCTATTAGAGGCTATCAGGCGCGAGGGACATATAAAACTGTAAAGGTTATCATTCCACTGCAAGCTTATATTCGTGGCCAGTTGGTTAGAAGACAAGCTATTTCTGCTTTGTATTGTGTGAAGTCAATAGTTAGATTTCAAGCATTGGCCCGTGGTTACAAGGTTAGGCACTCTGATATTGGCCTTGCAGTGCAGAAAATTTTTAAGGATACTAAATTCTCGAAATCTATTGGAGTAGTTGCATCTACACAGGCAGTGAAGCTCTCAGATAATATCTTTGCTCACAAGCTTCTGGCTTCATCACCCTCTGCTGTTTCTCCACATCTCAAATATAATACTGGTGAACCTAACTTTTGGGAATGGCTTGACCGTTGGACGAAATCACACTTTTGGGTACCTCTTCAAGAAGCGCAGAGATCTGATTCAGTGTCTGATAAGCAAAACGGAAGTTCTCAAACTGTAGAAACTAATAAGGGACAAGTTAAAAAAAATGCCAGGAAAGGACCTCATGATTTAGTCTCAGATTCCATAAAAAGTAAACGGAATCCAAAAAAGGATTCAAACCCCGCATTGCATTCAGCTAAGGAACATCCACCAAAGGAAATTGAGAAAAGGGGTTCTAGAAAATCTCAAATTCAGAATGTTTCTGATAAGTCGGAGGCTTCTAATGAGAAGACAACACACATCAGAAGAAAAGTTTCAGACCATACAAAAGTCAATGATGTTCCAGAGGCTGAAATTCAGAACATTTCACCAGAGAAGATGAAATGTTTGGCAGTGTCAAAGTCAGAAGAAGGTGATGTTGAGAAAAGTCTTACACAGCAAGCAGAAGAGCATGATAATAGTTTGATGAATGGTAAAGATGGAGGAGTGATTGAGGAGTTGAATGATGTGAAGAGTAAGAATTTCCAGAGAAGAGCTTCCCTGCCTGCTAATTTTACAGATCTTGAAAATGTGTTGCATGATAACACTCCAAGACTTCCAAGTTACATGGCTCCTACTGAATCTACAAAAGCTAAGCTAAGAGGACAGTGTTCTCCACGGTCTGTTAGTGATCTGGCAGATGTAAGCAGCATAACTCGCCGGCTTTCGCTTTCATCTTCGCTTAGCGGCAAGCTAGGTTCATTCTCTCCACGATCAGATAGATTGGCTGCCTTGACCAACAAGATAAGGACTGATAGATCTCTATCATCTTCAAGGGATGGAACTGATAAGTTGATTCAACCTCAGTGGAGAAGGTGA 1584 0.4015 MGRQSPGKWIRNLLLGKRSSSKSKSSREKDIYKPLSNKDVLVVSSETSMSSSISGANAIKGKLSEKEVISVSSNDGVILENEVEQANGKSLDDFCSEEHNEKSRLIKTAITIQAAIRGYQARGTYKTVKVIIPLQAYIRGQLVRRQAISALYCVKSIVRFQALARGYKVRHSDIGLAVQKIFKDTKFSKSIGVVASTQAVKLSDNIFAHKLLASSPSAVSPHLKYNTGEPNFWEWLDRWTKSHFWVPLQEAQRSDSVSDKQNGSSQTVETNKGQVKKNARKGPHDLVSDSIKSKRNPKKDSNPALHSAKEHPPKEIEKRGSRKSQIQNVSDKSEASNEKTTHIRRKVSDHTKVNDVPEAEIQNISPEKMKCLAVSKSEEGDVEKSLTQQAEEHDNSLMNGKDGGVIEELNDVKSKNFQRRASLPANFTDLENVLHDNTPRLPSYMAPTESTKAKLRGQCSPRSVSDLADVSSITRRLSLSSSLSGKLGSFSPRSDRLAALTNKIRTDRSLSSSRDGTDKLIQPQWRR 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02900 527 SMART iq_5 104 126 IPR000048 GO:0005515
Viun3g02900 527 SMART iq_5 127 148 IPR000048 GO:0005515
Viun3g02900 527 SMART iq_5 152 174 IPR000048 GO:0005515
Viun3g02900 527 MobiDBLite consensus disorder prediction 251 403 - -
Viun3g02900 527 ProSiteProfiles IQ motif profile. 129 156 IPR000048 GO:0005515
Viun3g02900 527 MobiDBLite consensus disorder prediction 251 273 - -
Viun3g02900 527 MobiDBLite consensus disorder prediction 335 356 - -
Viun3g02900 527 MobiDBLite consensus disorder prediction 274 325 - -
Viun3g02900 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 170 IPR027417 -
Viun3g02900 527 ProSiteProfiles IQ motif profile. 105 129 IPR000048 GO:0005515
Viun3g02900 527 MobiDBLite consensus disorder prediction 372 398 - -
Viun3g02900 527 Pfam IQ calmodulin-binding motif 109 122 IPR000048 GO:0005515
Viun3g02900 527 Pfam IQ calmodulin-binding motif 134 146 IPR000048 GO:0005515
Viun3g02900 527 Pfam IQ calmodulin-binding motif 155 170 IPR000048 GO:0005515
Viun3g02900 527 MobiDBLite consensus disorder prediction 503 527 - -
Viun3g02900 527 PANTHER IQ-DOMAIN 5-RELATED 1 481 - -
Viun3g02900 527 Pfam Protein of unknown function (DUF4005) 436 498 IPR025064 -
Viun3g02900 527 Gene3D - 102 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02900 Viun-Chr3 35071312 35075161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02900 1 527 IQD Protein Family AT1G14380 31.323 2.77e-56 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02900 - - vun:114179925 989.949