Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02896 ATGATGCCGCAAGATTTGAAGCAGCATCATAATGAAGAGTCCACGAAGAAGGAGCACAGTGAAGAATCTAAAAAGAAGGAGCACAATGAAGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGGGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTTAAAGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACACTCTGCCGAAAGAAAGAAAAATATGCAGCATTAGCAAAAGAGAACAGTACTTCATACATCAATTCAAATAACAAGAGAATTATGTTCCAACAGTATAATAATGTGGATACAACAGCTGAATCTGGAGTACCTATTAAAAAGATGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGAGCAAATTTGGAGACCGATCACATTTACGAAATGGAACTCCAATAAATCAACAGCAAAGAGCACCATTGGCAGTATTAGCTGAAAACTCTCATAATTCAAACAACTTGCCAGATCAGCGGCATGATTGCAATCCCAAGTTTAATTCTGCCCAAGATGACCAGATTCAAGGAACATTTCTCAAAAGGGATGACCCAAAGAGAAGTGTGTTGATAGAACAGGCAGAGTTACTAAGTTCACTAGCTCTAAAAGTTGATACCGAAAACGTGGACCAAAGGCTTGAACACACTTGGAAGATTCTTCAAGAGTTTCTGAACCGAAACAAAGAATCAGACATCCCTTGTCACAAGATTCCAGATTTACAGCTTGTAGATAAAGATATTAAGGACTTGAAAAGCGGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAAAAATACGAAGATTCTCCAGGCAGTTCTGGATACAGTACAGAATCAACTTTCCTCGGTCAGTCAGCCGGTGATAATTCAGAGCACACATTACATCAAGATATTGGAACTGAAATGAAGTCTGAACAAGTTGGAGATGAAAAAGGAGTAGGCAGAGATGATAAAGGGGTTCTTTGTACTGCAAATGTTGATCAAGAGATACTGCCATATTGTGAGGAACAGATAAACAGTGATGGGATTGTTTCTACCTCATCAAGATTGGAGTTCAGCTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCACAATTTTCTGAAAGTGAAAGGAACTTCCTAAGGAAAACTCTAGGAGTGGAATCTCCATCCATCAACCCAAGTGCCGACTCATCTCAACCGCCACCTTGCAAAAGAGCCCTACTACCAAGTCTATGA 1464 0.4071 MMPQDLKQHHNEESTKKEHSEESKKKEHNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALAKENSTSYINSNNKRIMFQQYNNVDTTAESGVPIKKMRRAHIPDDAEKSKFGDRSHLRNGTPINQQQRAPLAVLAENSHNSNNLPDQRHDCNPKFNSAQDDQIQGTFLKRDDPKRSVLIEQAELLSSLALKVDTENVDQRLEHTWKILQEFLNRNKESDIPCHKIPDLQLVDKDIKDLKSGNEEGQACWRQVEKYEDSPGSSGYSTESTFLGQSAGDNSEHTLHQDIGTEMKSEQVGDEKGVGRDDKGVLCTANVDQEILPYCEEQINSDGIVSTSSRLEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLRKTLGVESPSINPSADSSQPPPCKRALLPSL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02896 487 MobiDBLite consensus disorder prediction 1 37 - -
Viun3g02896 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 89 IPR017930 -
Viun3g02896 487 ProSiteProfiles Myb-like domain profile. 42 85 IPR001005 -
Viun3g02896 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Viun3g02896 487 Pfam Myb-like DNA-binding domain 42 102 - -
Viun3g02896 487 PANTHER MYB PROTEIN-RELATED 41 208 - -
Viun3g02896 487 SUPERFAMILY Homeodomain-like 38 132 IPR009057 -
Viun3g02896 487 MobiDBLite consensus disorder prediction 190 212 - -
Viun3g02896 487 SMART sant 90 138 IPR001005 -
Viun3g02896 487 SMART sant 38 87 IPR001005 -
Viun3g02896 487 MobiDBLite consensus disorder prediction 462 487 - -
Viun3g02896 487 CDD SANT 41 85 IPR001005 -
Viun3g02896 487 MobiDBLite consensus disorder prediction 343 361 - -
Viun3g02896 487 FunFam Transcription factor MYB124 34 90 - -
Viun3g02896 487 Gene3D - 93 166 - -
Viun3g02896 487 MobiDBLite consensus disorder prediction 342 361 - -
Viun3g02896 487 Gene3D - 29 90 - -
Viun3g02896 487 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Viun3g02896 487 CDD SANT 94 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02896 Viun-Chr3 34958581 34964608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02896 28 335 MYB Transcription Factor Family AT2G02820 58.280 7.79e-127 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g02896 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02896 K09422 - gmx:100807667 675.626