Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02888 ATGGCTGATCCTCAGAAAACTGCTCTTGGCGAGAGAGATATCGAGCAGGCAATTACATTTCTTAAGAAAGGCTCGTATCTTCTAAAGTACGGGCGAAGAGGGAAGCCAAAGTTCTGCCCATTTAGGCTTTCCAATGACGAGTCTCTACTGTTATGGTACTCTGGCAAGGAAGAGAAACAGCTTAAGCTCGGTACAGTTTCAAGGATCATTCCAGGGCAGCGAACTGCAACATTTCAGCGGTATCCACGACCTGAGAAGGAATATCAATCATTTTCTCTTATATACAACGACAGATCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTATTGGTCTTAAGGCATTAGTTACTCGAGGGAACAGTCGCAAGTGGAGATTTGAGTCGAGAACTGATGACAGTCAGTGTTCTGATAGTCCAAAATCTAGCACACGAAAATCCACTCCTTCAAATACACCATCTTCTGACCCTGGAGAAGGTGGTGGAGCTGCTTTTGATGTGAAAAATAGATGGGTTAAGGCTTTCTCCGAAATAATTTCGTTCAATGCAGCTAGCAAGGGTTCCAGTCAAGCTGAATCTGTTGCAAATTCCTCCTTATCCTCTGGTTCTGCAGATAACTCAAGCAATCGAAATTCTTCATCTGAGGCATTTCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAAGTGATGTTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGTGTACATAGAGTTGGAGCCTTGTCTAGTTCCCAGATGGATGCTTTCCTCCCCAAGGCATTGGAATCAAAATTAGTTCTAGATGTTCAAAGTATTAGTTGTGGCTACAGACATGCTGTTCTGGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTCATCACCCTAAACTTGTTGAAGCTCTTGGTGGCTTGAATATTGAGTTAGTAGCATGCGGAGAATATCATACATGTGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAACTCTGGCATGCTTGGACATGGAATTGAAGCCACTTACTGGATTCCTAAGAAAGTAAGTGGTAGTTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCATACAGCTATTGTTACATCAGCTGGGCAATTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGACACGGAAATCATAGTAGTGCAACTATTCCTCAGGAAGTGAAAACTTTGAGAGGGTTTAGAACAACCACGGTTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGATAACCGAATCTTCTACAAGCTCATCTTGTAAAAGACTTTTCACGTGGGGTGATGGAGATAAAGGCCAACTTGGACATGGTGATAAGAAACCTAGACTATTTCCTGAGTGTGTAATTGCATTGAGTGCTGAAAACATTAGCAAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACGTGTATATACAGTAGGAAGCACTGCTTATGGGCAACTTGGCTGTCCTGCATCCGATGGAAAAGTCCCTACGTGTGTTAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCCTGACCTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCACGGAGACAATGATCACAGAAATAAACCCACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTTTTTTGTGGTTCAAATTTTACCGTTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCATTCTACATGTTTTGGATGTCGTAATTCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAATCTTTAAAAGCTTCCCTTGCTCCCAATACTAGTAAGCCGTATCGAGTTTGTGAGGACTGTTATCTCAAACTTAAAAAATCTGCTGAGTCAGTACCCTTGGTGCAAAGCCCTAGTTTGAGAAGTGTAAGTTTGCAAGATAACAAAATCACTAAAATACAGGGAACACTATTGAGGCTTTCATCTTTTGGTTCTATTCTTCAAACAGTAAGTGGTCAATCGAAGCTTCCAGATTCACAAGATATCCATCGTTCCCCGGCTTCAAATGGAAAATTAGAGACGAGGGGTTTTGCTTCTTCAAAATCATCAAATTCTGTTTTTGTGGATTCTAAGAAACACTTTTCATTTTCTGAGCCTGCTGCAAGAATATCTTGTCAATCAACATCTCCAGCTTCATCAAAGTCAAGTCCAAGAGAATCGTATGAAGATATCAATGATGATTTAAAGCAAAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACTCAGGTTGAAGATCTTACTCGAAAATCGAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTACAGTAGCTGCAGATGAAGCTGGAAAGTGTAAATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGTTAAAGGAAATGGTGGAAAGGCTGCCAGAAGGACACAATGCTGACTGCAGTACAGAGCTCTGTGCTGAAACCACTAAAAATATTCTAGATCATTCCTTGGATGTGAGCCATATAAGAAACACTGCCATGCTACAAAATGAAGGCAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTTCGTACGTTTGTCTCTCCTGCCAGGTGGTGGTAATGAGCTTAAGCGTGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAAGAAGCTGAGAAGTGGTGGACGGAAAATGGAAGCAAAATATTGGAGCGGCACAACATAGTTGCTCTATAG 3033 0.4141 MADPQKTALGERDIEQAITFLKKGSYLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKQLKLGTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFIGLKALVTRGNSRKWRFESRTDDSQCSDSPKSSTRKSTPSNTPSSDPGEGGGAAFDVKNRWVKAFSEIISFNAASKGSSQAESVANSSLSSGSADNSSNRNSSSEAFRVSLSSAVSSSSQGSYHEDFDSLSDVFIWGEGIGNGILGGVHRVGALSSSQMDAFLPKALESKLVLDVQSISCGYRHAVLVTKQGEIFSWGEESGGRLGHGVEMDVHHPKLVEALGGLNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGIEATYWIPKKVSGSLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNHSSATIPQEVKTLRGFRTTTVACGVWHTAAVVEVITESSTSSSCKRLFTWGDGDKGQLGHGDKKPRLFPECVIALSAENISKVACGHSLTIALTTSGRVYTVGSTAYGQLGCPASDGKVPTCVKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTVAVCLHKWIPSVDHSTCFGCRNSFNFRRKRHNCYNCGLVFCKSCTSKKSLKASLAPNTSKPYRVCEDCYLKLKKSAESVPLVQSPSLRSVSLQDNKITKIQGTLLRLSSFGSILQTVSGQSKLPDSQDIHRSPASNGKLETRGFASSKSSNSVFVDSKKHFSFSEPAARISCQSTSPASSKSSPRESYEDINDDLKQRNDILSQEVISLRTQVEDLTRKSKSLEAELERTSKQLKEVTTVAADEAGKCKSAKEVIKSLTAQLKEMVERLPEGHNADCSTELCAETTKNILDHSLDVSHIRNTAMLQNEGSSNVANLILPNGAKTQSGKAEWVVQDEPGVFVRLSLLPGGGNELKRVRFSRKHFTEEEAEKWWTENGSKILERHNIVAL 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02888 1010 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 451 461 IPR000408 -
Viun3g02888 1010 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 466 - -
Viun3g02888 1010 Gene3D - 176 368 IPR009091 -
Viun3g02888 1010 Gene3D - 369 470 IPR009091 -
Viun3g02888 1010 Pfam Transcription factor regulating root and shoot growth via Pin3 950 1005 IPR013591 -
Viun3g02888 1010 Gene3D - 471 642 IPR009091 -
Viun3g02888 1010 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 292 302 IPR000408 -
Viun3g02888 1010 CDD PH_PLC_plant-like 12 122 - -
Viun3g02888 1010 SUPERFAMILY PH domain-like 13 121 - -
Viun3g02888 1010 Pfam FYVE zinc finger 629 695 IPR000306 GO:0046872
Viun3g02888 1010 SUPERFAMILY FYVE/PHD zinc finger 629 704 IPR011011 -
Viun3g02888 1010 Pfam Transcription factor BRX N-terminal domain 865 894 IPR027988 -
Viun3g02888 1010 CDD FYVE_like_SF 638 691 - -
Viun3g02888 1010 PRINTS Chromosome condensation regulator RCC1 signature 516 534 IPR000408 -
Viun3g02888 1010 PRINTS Chromosome condensation regulator RCC1 signature 358 374 IPR000408 -
Viun3g02888 1010 PRINTS Chromosome condensation regulator RCC1 signature 399 415 IPR000408 -
Viun3g02888 1010 PRINTS Chromosome condensation regulator RCC1 signature 415 429 IPR000408 -
Viun3g02888 1010 PRINTS Chromosome condensation regulator RCC1 signature 572 593 IPR000408 -
Viun3g02888 1010 PRINTS Chromosome condensation regulator RCC1 signature 308 324 IPR000408 -
Viun3g02888 1010 MobiDBLite consensus disorder prediction 140 161 - -
Viun3g02888 1010 Gene3D - 13 129 IPR011993 -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 306 357 IPR000408 -
Viun3g02888 1010 Coils Coil 870 890 - -
Viun3g02888 1010 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 701 IPR013083 -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 305 IPR000408 -
Viun3g02888 1010 MobiDBLite consensus disorder prediction 743 766 - -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 413 464 IPR000408 -
Viun3g02888 1010 ProSiteProfiles BRX domain profile. 951 1006 IPR013591 -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 358 412 IPR000408 -
Viun3g02888 1010 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 886 - -
Viun3g02888 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 526 573 IPR000408 -
Viun3g02888 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 306 354 IPR000408 -
Viun3g02888 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 413 461 IPR000408 -
Viun3g02888 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 357 408 IPR000408 -
Viun3g02888 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 476 523 IPR000408 -
Viun3g02888 1010 Pfam Regulator of chromosome condensation (RCC1) repeat 578 625 IPR000408 -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 527 576 IPR000408 -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 577 628 IPR000408 -
Viun3g02888 1010 SMART fyve_4 625 696 IPR000306 GO:0046872
Viun3g02888 1010 SUPERFAMILY RCC1/BLIP-II 245 630 IPR009091 -
Viun3g02888 1010 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 475 526 IPR000408 -
Viun3g02888 1010 Coils Coil 807 862 - -
Viun3g02888 1010 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Viun3g02888 1010 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 633 695 IPR017455 -
Viun3g02888 1010 MobiDBLite consensus disorder prediction 131 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02888 Viun-Chr3 34645450 34659570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02888 949 1007 Major Intrinsic Protein MIP AT1G31880 50.847 2.79e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02888 - - pvu:PHAVU_003G066900g 1532.69