Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02886 ATGGTTTTCTTTTTTATTTCACACCTTAGTTTTGCAAAACAATCAAAGATAAACAGTTTGAAAATAAATGTCATTGATCGATGTTGGAGACCAAACCCTGAATGGATGAGACGTCGATCTCAATTGGCCACATGTTCTGTGGGCTATGCTGGCAAGATGATAAATAACATTGGTAATGACCTTATTCATTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCCAAACCCAATACCTTGAGATATGGAGCTTCTATTATTCAAGGTAAAGTGTGGATCACATTCCAAAAGGACATGATTATCACATTAGAAAAACCTCTTCTCATTAGCAGTTTTACCACCATTGATGGTCGAGGTGTTAACGTCCACATTGCTAATAATGCATGTCTAATGATCTTTAAGGCCACCAACATAATCATTCATAACATTCGAGTTCATCATTGCAAACCTCAAGCCCCTGGAATCGTAATGGGACCCAAAGGAAAGGTGATCCCTTTAGGTCATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACGTTATATGATTGCCAAGATGGTTTGCTAGATGTAACACGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAATCAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGATAAGAATATGAAGGTAACAGTTATGTACAACCATTTTGGACCTAATTGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCCAACAATCTTTATCAAGGATGGCTTCAATATGCTATTGGCGGAAGCATGGAACCTAGTCTCAAAAGTGAAGCTAATCTCTTTGTAGCACCAACAATAGGAAATAAAGAGGTGACATGGAGAAAAAACAATGATACAAATAAAGATAGATGGGATTTTCATTCGGTAAGGGACATCTTTGAAAATGGAGCCTCATTCACTATAACAAGAGGAGGAAATGTTCAGAAACCGAATTATAGAAAAGAACAAAATTTTAAAGTTGTAGATGCCAAATTTGTAAGATCATTGACACGTTTATCGGGTGTGTTACGACTCAATAAAAAATTTATATACTAA 1122 0.3619 MVFFFISHLSFAKQSKINSLKINVIDRCWRPNPEWMRRRSQLATCSVGYAGKMINNIGNDLIHYKVTDSSDDPINPKPNTLRYGASIIQGKVWITFQKDMIITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHNIRVHHCKPQAPGIVMGPKGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVMYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVTWRKNNDTNKDRWDFHSVRDIFENGASFTITRGGNVQKPNYRKEQNFKVVDAKFVRSLTRLSGVLRLNKKFIY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02886 373 Gene3D - 22 366 IPR012334 -
Viun3g02886 373 PANTHER PECTATE LYASE 18-RELATED 19 369 IPR045032 GO:0030570
Viun3g02886 373 SMART amb_all 99 296 IPR002022 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 45 62 IPR018082 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Viun3g02886 373 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Viun3g02886 373 Pfam Pectate lyase 110 290 IPR002022 -
Viun3g02886 373 SUPERFAMILY Pectin lyase-like 13 339 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02886 Viun-Chr3 34634181 34636197 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02886 53 300 Polysaccharide Lyase AT5G09280 71.371 7.09e-141 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02886 K01728 - gmx:100780437 645.195