Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02880 ATGGTTTTCTTTTTTATTTCACACCTTAGTTTTGCTATACCATCTAAGATAAACGGTTTGAAAATGAATGCTATTGATCGATGTTGGAGACCAAACTCTGAATGGATGAGACATCGTTCTCAATTGGCCACATGTTCTGTGGGCTATGCTGGCAAGATGATAAATAACATCGGTTCTGACCTTATTTATTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCAAAGCCCAACACCTTGAGATATGGAACTTCTATTATTCAAGGTAAAGTGTGGATCACATTTCAAAAGAACATGATTATCACATTAGAGAAACCTCTTCTCATTAGCAGTTTTACCACCATTGATGGTCGAGGTGTTAATGTCCATATTGCTAATAATGCATGTTTAATGATCTTTAAGGCCACCAACATAATCATTCATAACATTCGAGTTCATCATTGCAAACCTCAAGCTCCTGGGATTGTAATGGGGCCTAAAGGAAAGGTGATTCCTTTAGGACATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATGATTGTCAAGATGGTTTGCTGGATGTGACACGAGGTTCTACTGATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAAGTTATGCTTCTTGGACATGATGATGGATATGTGAGAGACAAGAATATGAAAGTTACAGTGGTGTATAACCATTTTGGACCTAAATGCAATCAACGTATGCCAAGGATTCGTCATGGATATGCACATGTAGCAAACAATCTTTATCAAGGATGGCTTCAATATGCTATTGGTGGAAGCATGGAACCTAGTCTGAAAAGCGAAGCTAATCTCTTTGTAGCACCAAAAATAGGGAACAAAGAGGTGACATGGAGAAAGAGCAATGATACAAATGGAGATAGATGGGATTTTCATTCGGTAAGGGATATGTTTGAAAATGGAGCCTCATTCACTGTAACAAAAGGAGGAAGTATGCAAAAACCGAATTATAGCAAGGAACAAATTTTCAAAGTTGTAGATGCCAAATTTGTAAGATCGTTGACACGTTCATCGGGCGTGTTACGTCTCAATAAAAATTATATATATTGA 1122 0.3681 MVFFFISHLSFAIPSKINGLKMNAIDRCWRPNSEWMRHRSQLATCSVGYAGKMINNIGSDLIYYKVTDSSDDPINPKPNTLRYGTSIIQGKVWITFQKNMIITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHNIRVHHCKPQAPGIVMGPKGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTDVTISNNWFKNQDKVMLLGHDDGYVRDKNMKVTVVYNHFGPKCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFVAPKIGNKEVTWRKSNDTNGDRWDFHSVRDMFENGASFTVTKGGSMQKPNYSKEQIFKVVDAKFVRSLTRSSGVLRLNKNYIY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02880 373 SMART amb_all 99 296 IPR002022 -
Viun3g02880 373 Gene3D - 22 366 IPR012334 -
Viun3g02880 373 PANTHER PECTATE LYASE 18-RELATED 21 369 IPR045032 GO:0030570
Viun3g02880 373 Pfam Pectate lyase 110 290 IPR002022 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 107 123 IPR018082 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 45 62 IPR018082 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 251 270 IPR018082 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 313 337 IPR018082 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 273 292 IPR018082 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 171 192 IPR018082 -
Viun3g02880 373 PRINTS Pollen allergen Amb family signature 344 367 IPR018082 -
Viun3g02880 373 SUPERFAMILY Pectin lyase-like 18 365 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02880 Viun-Chr3 34510488 34511902 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02880 53 300 Polysaccharide Lyase AT5G09280 71.774 4.58e-141 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02880 K01728 - gmx:100780437 642.114