Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02863 ATGGAAGAGAGAAATGATAACGGTGAGAAACTGGATGAGGTTGTGCTACCGGGTTTCAGGTTCCATCCAACAGACGAGGAGCTTGTTGGATTTTACCTAAAGAGAAAGATTCAGCAGAGGCCACTTTCCATTGAGCTCATCAAGCAGCTTGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGTTGGCGACCACTGGGGAGAAAGAGTGGTATTTCTACTGCCCCAGAGACAGAAAGTACAGGAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAGGCTACAGGGACGGATCGCCCTATATATTCCTCTGAGGGTTCCAAGTGTATTGGTCTGAAGAAATCCCTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGGATTAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCACTAACCCTTCTTCATCCCCTAAGAAGTTCATGGACAAGACCATTCCTGCTAACGAATCCTGGGCAATCTGCAGAATCTTCAAGAAAACTAATGCTACAGCACAAAGAGCTCTCTCTCACTCTTGGGTCTCACCCGTACCTGAAACCACCACATCAGATCATATGTTTTCCACTGATAGATATGGCAACCAATTTTCTTCACCAAACATGCCATTGCCAAAGAAAACTAGCTTAACCAGCCAGTTTTGTACTTTTAATCACAGTGACACACAACAACACTCAACCACCACTAGTAGCAGCACCCCTTGTCCTATAGATATTCTAGCTTCTTATAACAAACCAATTATTAATCCATTAATGCTTTACAAGCCCTTAGATCTGTTACCCATTTCAAATGGAGACCTTAGCACTGGCTTAATATTCTCATCTCCTGTTGAAACTTCAACAAACTGTGCTAAATCTTCGATGGATGTTTCTTCATTGCTAATGAGTACCTCAACTTCTGAGGGAATGTGCACAAACTTTGGTGGGTTACATGAGCATAGTAACGGCTACCAAATACCACTACTACGTGAGATGCAAGGGAGCTTTGGCAACCACGATGACAATGTGTTGGTAAAGATTCCTAACGTGAATGTGCCTCGTGTTGCTGACCAACAATCGGAGACAGTGCGATCCATTGGGTTTCCATTCAGTATTGGCGATGCATGGAAGTCAAATGCGCTTTGGGATACTTCATCTTTGTCCTTGTGA 1188 0.4343 MEERNDNGEKLDEVVLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLTNPSSSPKKFMDKTIPANESWAICRIFKKTNATAQRALSHSWVSPVPETTTSDHMFSTDRYGNQFSSPNMPLPKKTSLTSQFCTFNHSDTQQHSTTTSSSTPCPIDILASYNKPIINPLMLYKPLDLLPISNGDLSTGLIFSSPVETSTNCAKSSMDVSSLLMSTSTSEGMCTNFGGLHEHSNGYQIPLLREMQGSFGNHDDNVLVKIPNVNVPRVADQQSETVRSIGFPFSIGDAWKSNALWDTSSLSL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02863 395 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Viun3g02863 395 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 234 - -
Viun3g02863 395 FunFam NAC domain-containing protein 35 24 177 - -
Viun3g02863 395 Gene3D NAC domain 24 179 IPR036093 GO:0003677|GO:0006355
Viun3g02863 395 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Viun3g02863 395 SUPERFAMILY NAC domain 14 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02863 Viun-Chr3 34281263 34283151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02863 1 320 NAC Transcription Factor Family AT1G26870 57.958 4.72e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g02863 NAM 9.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02863 - - vra:106768003 749.969