Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02860 ATGACACAGCTACCATCTTCATCATCATCTTCTTCTTCTTCCACTTGTGAAGGGAGCCATGATGTGTTCCTCAGTTTCAGAGGCGATGACACTCGAAGTGGCTTCACTGGCAACCTATACAAGTCTCTTTGTGACAGGGGAATTCACACCTTCATGGATGATGAGGGGCTTAGAAAAGGGGAAAAGATTGGACCTGCTCTTTTCAAGGCTATTGAGCAGTCTAGAATTGCCATTGTTGTTTTGTCTGAAAATTATGCTGACTCAACTTACTGTCTTGAAGAACTTGTCGTGATCCTTGACTGCATAATGAAAAAGGGTCGACTGGTTTGGCCAGTGTTTTACGGGGTTACTCCATCTTATGTGCGGTTTCAGAAGGGTTCTTATGGGAAAGCATTGGCCAAGCATGGAGAAAGATTCAAGAATGACCAGGAGAAGCTCCAAAAATGGAAGCTAGCTCTTCAAGAAGCTGCTGATTTGTTTGGTTCGCATTTCAAACTCAAACAAGGGTATGAGCATGAACTTATTCGGACAATTGTTGAAGAGGTTTCCAAAAAGATAAATCGTAGCCCTTTACACGTGGCTAATTATCCAATTGGATTGGAGTCTAGAGTGCAAGACGTGAAGTCCCTTTTGGATGTTGGATCTAATCGGGGAGTAAGCATGGTTGGGATTTATGGAATCGGGGGAATAGGTAAGACTGCAATTGCATGTGCAGTGTACAATGCCATTGCCGATCAATTTGAAGTTCAGTGTTTCCTTGGCGATATTAGACAAAAATCATTGAAGTATGATTTAGTACAACTTCAGGAGACAGTACTTTCTGAAATGGTTGGGGAGAAAAGTATTAAGTTGGGGAGTATTAATAGGGGAATGGCAGTTATGAAAAGCAAGCTTCAAAGAAAGAAAGTTCTTCTGATTCTTGATGATGTTGATAAATTGGAGCAATTAAAGGCACTTGCTGGTGATCCTTCCTGGTTTGGTGATGGCAGCAAAATCATTGTCACGACAAGGAACAGACATTTTTTACGTGTACATGGTTTTGAAAGAACATACGAAGCAAAAGCATTAGATGATAAAGAGGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAGCAATGAAGTTGGTCCAGGTTACTTGGATATCTCTAAGCGTGCAGTATTTTATTCCAATGGCCTTCCATTGGCTTTGGAAATAATAGGTTCTAACTTGAATGGTATAACAATGTCTGAATGGGAAGCAGCATTAGATACCATTGAAAGGATTCCAGATGAAGATATTCAGGAAAAACTAAAAGTAAGCTATGATGGTTTGAAAGGAGATGAGAAGGAAGTTTTCCTTGACATGGCTTGTTTCTTTAGAGGCTACCATTTGAAAGATGTCATAAGTTTATTGCTACAAGGTCGTGGTTTCTCGCCAGAGTATGCTATTCGGATGCTGGTAGATAAATCTCTCATAAAGATCGATCAATATGGTTTTGTGCTAATGCATAACTTGGTAGAGGACATGGGCAGAGAAATTGTCAGGCAAGAATCACCATCAGAGCCTGGAAAACGGAGTAGATTATGGCTTTATGAGGATATTGTTGATGTTTTAGAAAATGACAAGGGAACAGATTCAATTGAAATAATCATGCTACACTTGCCAAAGAATAGGGAAGTTCTATGGAGTGGAAGTGAGCTCAAGAAGATGACAAACTTGAAAATGCTTACTATTGAAAATGCTGACTTTTCTAGAGGCCCTGAACATCTCCCAAGTAGTTTGAGAGTACTAAAGTGGCGGGGATATCCTACACAGTCTCTGCCACCTGAATATGATCCAAGGAAACTTGTTATGTTAGACTTGTCTATGAGTCGCAATATATTGGGCAAACAACTCCACCTCATGAAGTTCGAGTCTTTGAGTGAAATGATTTTAAGAGGTTGCAGATTCATAAAACAGGCACCTGACATGTCTGGAGCCAAAAATTTAAGAAAGCTGTGTCTTGATAACTGCAAGAATTTGGTAGAGGTTCATAATTCCATTGGAGTTCTTGACAAACTAACATGGTTCACTGCTATTGGATGCACCAGTCTAAGGACTCTTCCCCAAAGCTTCAAGTTAACATCACTTGAATATCTGTCTCTCAGAAAATGCTCAAGCCTCCAGCGTTTGCCAAACATATTAGAAGAAATGAAACATATGAAAAATCTTGACCTTTGTGGAACTGCTATTGAACAATTGCCATATTCGTTTAGGAAACTCACTGGGCTTAAATATTTAGTACTAGACAAGTGCAAGAGGCTTAATCAGATCCCAATAAATATTTTGATGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGACGATATGTAAACTTGATCCTTGGTAAAAGTGAGGGACAAGTAAGATTGGCTTCATCTGAGTCTTTGAGAGATTTTAGATTAAACTACAATGATTTGACACCCACCAGCTTCCCCAATGTAGAGTTCTTAGACCTAACTGGCTGTGCTTTCAAAGTCCTTCCTGAATGCATCAGCCAATGTCGATTTCTAAGGAATCTAGTTTTGGACAACTGCAAGGAGCTTCAAGAAATCAGAGGGGTTCCTCCGAAGATAAAATATCTGTCGGCAATAAACTGCACATTATTGTCTCATGAGTCTCAAAACATGTTGTTGAATCAGAGATTACATGAGGGTGGAGGAACAGATTTTTCCCTTCCAGGAACAAGGTTACCAGAATGGTTCGATCATTGTACTAGGGGGCCATCCCTGTCTTTCTGGTTTCGTAACAAATTTCCTAGGATGACTCTAGGTGTTGTTGGAGTTTTAGACAAGCAAGGCAGTTTTCCCATGTCAAGATTTCACCTGCTCATCAATGGCATTCAAAAGCTGCATTGCCATTTCACTGTGCAATCAAAATTAATCACATATCATATATTCTTGTCCGATGTGCTGCTCAAGTCCTACGATGGTGGATTGGAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGGTTTCATGCGTAGGACCAAGAGTCTTTCCACATTCATGCAGAACCAAGAAAGGAATCATTAAATGGATGGGGGTTCATGTTCACAAGCAAAAAACAAACATGCACGATATCCGATTCATAAATCCTTGGTCTCCAAAAAGAACACACAGTGAAGTTTCCAAGCCTGATCTGCAAGAAAGTTTTCAGTCATTGCCCAAAAGAATCCGTGTATCACATCGCAAGGAAATTTGTGAGGCACCACAGTCGAAGCAGCATGAAGCTAACAGTGGTTATCATGGTGTATCACAGAGGCTATGGTTGGCAATTTGTAGCATTGCGGCTCCTCTAAATGTTAAAGTACTGATGTGGAATATTTGCCAAGATAATTTGCCAACTTTTGAATATCTTTTCAGGAGAAAGCTTGTACTGAGTCCACTCTGCCCCATCTGTGGAAAGGAGCCTGAAACTGTTGAACATGTGTTCCTGTTTTGTCCATGGACACGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCGTTGATGCTAAAGAAGTTCAAAGCTTTCAACTTTGGCTCTGGCACAAACTGATGGAGATTCAAAGGGTATATCCAGAAAATGCCAACCAAATATCTGCTCAAGTAGGAAGCATTTGTTGGTCTATCTGGAAAGGAAGGAATGAATTTGTTCTTGAAGGCAAACCTGTCAATCCTTTGATTTTAAGGTAG 3711 0.4034 MTQLPSSSSSSSSSTCEGSHDVFLSFRGDDTRSGFTGNLYKSLCDRGIHTFMDDEGLRKGEKIGPALFKAIEQSRIAIVVLSENYADSTYCLEELVVILDCIMKKGRLVWPVFYGVTPSYVRFQKGSYGKALAKHGERFKNDQEKLQKWKLALQEAADLFGSHFKLKQGYEHELIRTIVEEVSKKINRSPLHVANYPIGLESRVQDVKSLLDVGSNRGVSMVGIYGIGGIGKTAIACAVYNAIADQFEVQCFLGDIRQKSLKYDLVQLQETVLSEMVGEKSIKLGSINRGMAVMKSKLQRKKVLLILDDVDKLEQLKALAGDPSWFGDGSKIIVTTRNRHFLRVHGFERTYEAKALDDKEALELFSWHAFKSNEVGPGYLDISKRAVFYSNGLPLALEIIGSNLNGITMSEWEAALDTIERIPDEDIQEKLKVSYDGLKGDEKEVFLDMACFFRGYHLKDVISLLLQGRGFSPEYAIRMLVDKSLIKIDQYGFVLMHNLVEDMGREIVRQESPSEPGKRSRLWLYEDIVDVLENDKGTDSIEIIMLHLPKNREVLWSGSELKKMTNLKMLTIENADFSRGPEHLPSSLRVLKWRGYPTQSLPPEYDPRKLVMLDLSMSRNILGKQLHLMKFESLSEMILRGCRFIKQAPDMSGAKNLRKLCLDNCKNLVEVHNSIGVLDKLTWFTAIGCTSLRTLPQSFKLTSLEYLSLRKCSSLQRLPNILEEMKHMKNLDLCGTAIEQLPYSFRKLTGLKYLVLDKCKRLNQIPINILMLPKLERLTAVKCGRYVNLILGKSEGQVRLASSESLRDFRLNYNDLTPTSFPNVEFLDLTGCAFKVLPECISQCRFLRNLVLDNCKELQEIRGVPPKIKYLSAINCTLLSHESQNMLLNQRLHEGGGTDFSLPGTRLPEWFDHCTRGPSLSFWFRNKFPRMTLGVVGVLDKQGSFPMSRFHLLINGIQKLHCHFTVQSKLITYHIFLSDVLLKSYDGGLESVYGEDGWNHVEVSCVGPRVFPHSCRTKKGIIKWMGVHVHKQKTNMHDIRFINPWSPKRTHSEVSKPDLQESFQSLPKRIRVSHRKEICEAPQSKQHEANSGYHGVSQRLWLAICSIAAPLNVKVLMWNICQDNLPTFEYLFRRKLVLSPLCPICGKEPETVEHVFLFCPWTRPLWFGSDFQWCVDAKEVQSFQLWLWHKLMEIQRVYPENANQISAQVGSICWSIWKGRNEFVLEGKPVNPLILR 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02860 1236 Pfam TIR domain 20 189 IPR000157 GO:0007165
Viun3g02860 1236 Gene3D - 17 183 IPR035897 -
Viun3g02860 1236 Gene3D - 355 439 IPR042197 -
Viun3g02860 1236 SUPERFAMILY L domain-like 511 885 - -
Viun3g02860 1236 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 768 IPR044974 GO:0006952
Viun3g02860 1236 Pfam NB-ARC domain 201 431 IPR002182 GO:0043531
Viun3g02860 1236 Gene3D Ribonuclease Inhibitor 527 895 IPR032675 -
Viun3g02860 1236 PRINTS Disease resistance protein signature 390 404 - -
Viun3g02860 1236 PRINTS Disease resistance protein signature 297 311 - -
Viun3g02860 1236 PRINTS Disease resistance protein signature 221 236 - -
Viun3g02860 1236 PRINTS Disease resistance protein signature 699 715 - -
Viun3g02860 1236 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Viun3g02860 1236 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Viun3g02860 1236 SMART till_3 19 159 IPR000157 GO:0007165
Viun3g02860 1236 SUPERFAMILY "Winged helix" DNA-binding domain 426 533 IPR036390 -
Viun3g02860 1236 Gene3D - 184 347 IPR027417 -
Viun3g02860 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Viun3g02860 1236 Pfam zinc-binding in reverse transcriptase 1100 1166 IPR026960 -
Viun3g02860 1236 ProSiteProfiles TIR domain profile. 18 186 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02860 Viun-Chr3 34257394 34262325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02860 20 783 WRKY Transcription Factor Family AT4G12020 33.123 3.84e-91 322