Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02856 ATGGACCTGACCTCAAGCAGTACCCACACAATACAAACCTTCGATGCCGGTACTAAGACCACACCACCCATCAACCCCACCAATAATACCACCACAAAGTCTCTATCTTTCACCAACGGCACCCCAAAGCGCCACCCCTCCACCACCGCTGCTCCACCTCCTCAACCACCTTCCATGGTGGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCCTAGGTGGCCATGCACTTGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGTGGCTGCCACCGCAACTTCCACCGCCGTGATCCTCAGGAACACAGTAACCTCAACAACAACAATATTCACGGCGCCAACCCCAACGCCGCCGTCACCGCCAACAATAACCCGACTTTTTTAAGCTGCATCTACACCCCTTCAGCACCAGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCGAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCGCTCTCCCACGTGCCACCGTACCACGCTTCAGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTACTCTACACCCTCCGATGAACACCCCCAGCACCGAGGCCTAACCTTTTCGAGCGTGATGCTGAAGAGCGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCAGAACTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCCAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACCTTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAACGCAAATGCAAATTCTCCTCAAAGTATTGGGGATCATGATGACGGCAATAATACCAGCGGTGGAGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAATACCAACAACAATGACATTCACATGAATGAAGGAGATGGATGTGGCAATGTTCATGTCTCTCTTAATGGACTCTCATCTTAG 1107 0.5294 MDLTSSSTHTIQTFDAGTKTTPPINPTNNTTTKSLSFTNGTPKRHPSTTAAPPPQPPSMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHSNLNNNNIHGANPNAAVTANNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDEHPQHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMQNFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTFRRRLDQGENANPNANANSPQSIGDHDDGNNTSGGGGFDSDINNPYNPNTNNNDIHMNEGDGCGNVHVSLNGLSS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02856 368 MobiDBLite consensus disorder prediction 157 195 - -
Viun3g02856 368 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Viun3g02856 368 MobiDBLite consensus disorder prediction 300 351 - -
Viun3g02856 368 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Viun3g02856 368 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 62 114 IPR006456 -
Viun3g02856 368 MobiDBLite consensus disorder prediction 1 46 - -
Viun3g02856 368 SUPERFAMILY Homeodomain-like 230 296 IPR009057 -
Viun3g02856 368 MobiDBLite consensus disorder prediction 300 353 - -
Viun3g02856 368 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 293 - -
Viun3g02856 368 NCBIfam homeobox domain, ZF-HD class 235 292 IPR006455 -
Viun3g02856 368 FunFam Zinc-finger homeodomain protein 2 223 296 - -
Viun3g02856 368 MobiDBLite consensus disorder prediction 178 193 - -
Viun3g02856 368 MobiDBLite consensus disorder prediction 157 177 - -
Viun3g02856 368 Gene3D - 226 295 - -
Viun3g02856 368 MobiDBLite consensus disorder prediction 1 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02856 Viun-Chr3 34101346 34103116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02856 59 305 ZF-HD Transcription Factor Family AT1G69600 46.899 9.84e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun3g02856 ZF-HD_dimer 3.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02856 - - vum:124843063 649.047