Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02855 ATGAGCGATCATCTGGTGCTGTTCGTGGACCGCCTGGTGCGGCCCTTGCCAGTGGTGGAGCCGCTGGCCCAGCACCCGGTCCAGCCCGCTCCCGAGCCCTCAACCCCCGTGGAGGAAGCTGCGGCGGGCCCCTCCGGCTCCGCTTCGGCGGCCGAGGACGACAGCGTCGACGAGAACGCGCTGCTGCTGCCCTTGGCGGAGTGTCGCATTTGCCAAGAGGAGGATAGCATCAACAATTTAGAAACTCCTTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGTGATATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCCCCACCACCTCGTCTTCAACCCGAAGAAACTACCATTGATATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGACCCCCGACTCTTGGCAATTGCCGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCCGCTTCAAACGCCAATGGAGCTGCATTTTGTCGTTCAGTTGCTCTGATTTTAATGGCCCTTTTACTTTTGAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTACTTTTTTCTCTCTTTTCTTGCTTCGAGCTGCCGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGCAGGCGACAAAGACAGGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTTCTACAATCTGAACAACGTAGGGGTCTGCAGTTTGCCATAGCACCAGGACCAACAATGAGCACACACCAGTAA 852 0.5235 MSDHLVLFVDRLVRPLPVVEPLAQHPVQPAPEPSTPVEEAAAGPSGSASAAEDDSVDENALLLPLAECRICQEEDSINNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRLQPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNANGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAPGPTMSTHQ 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02855 283 FunFam RING/FYVE/PHD zinc finger protein 56 124 - -
Viun3g02855 283 SUPERFAMILY RING/U-box 67 118 - -
Viun3g02855 283 CDD RING_CH-C4HC3_MARCH 68 114 - -
Viun3g02855 283 ProSiteProfiles Zinc finger RING-CH-type profile. 60 120 IPR011016 GO:0008270
Viun3g02855 283 SMART ringv_2 67 114 IPR011016 GO:0008270
Viun3g02855 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 122 IPR013083 -
Viun3g02855 283 Coils Coil 156 176 - -
Viun3g02855 283 Pfam RING-variant domain 68 113 IPR011016 GO:0008270
Viun3g02855 283 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 247 IPR033275 -
Viun3g02855 283 Pfam Protein of unknown function (DUF3675) 119 237 IPR022143 -
Viun3g02855 283 MobiDBLite consensus disorder prediction 24 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02855 Viun-Chr3 34024226 34026882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02855 57 143 C3H Transcription Factor Family AT2G37950 35.354 1.76e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02855 - - ahf:112734090 452.981