Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02852 ATGGATCTTCAAAATGTGCAAAATCAAACCATGCGTTTGGTTCTCTCTACTGATGCAAAGCCTAGGCTCAAATGGACTCCTGAGCTTCACCAACGCTTCACTGAGGCTATTAATCAACTTGGAGGTGCAGAAAAGGCAACTCCTAAGAGCCTTATGAGAGTGATGGGGATTCCAGGACTCACTTTGTACCACCTCAAGAGCCATTTACAGAAATATAGGCTTGGGAAAAACTCACCGCTAGAAACCTGCTCTGACAACAAGCAACAAGGTTTCAGTGAAATCAAGAGCAGTGATGGTCATTGCAGCAGGGAAATCTGTACTGGGACCCAGAATCAGATGAATGAAAGCTTGAAGATTGCTGAGGCTCTCCAAATGCAAATGGAAGTACAGAGGAAACTTTATGAACAAATTGAGGTCCAAAGACATTTGCAGCTTCGAATTGAGGCTCAAGGGAAGTACCTACAATCAGTTCTATCAAAGGCACATGAAACACTTGCAAGATACGATTCTTCCACAACGGGCATAGAAGTTGCAAAATCTGAACTTTCTCAGTTAGTGTCAATAATCAACAATGCGTGTCCGACCTCTCCCATTTCAGAACTTACAGAAACAAGAGGGCTGAGTTTGAACTGTGGAGAGATGAAACAAGACAGAGGAACCATGTGCTCACTTGAAAGTTCTTTGACATCATCTGAAAGCTCTGGGAGAACTGAAGTAAGAGAACCACTAGATGAGGCAGAGAAGCCTCAAAAGACTAATGGTATTATTTCAGTTGAATTGCCATTGATGGAGATTCACCCAGAAGAAGGTACAGCATTCAAGGGAGATACAAGTGAAGGGAGAAAGAGAAGTGCAGGAACTGATTCCAATGGTTGCTGTGTTGATCAACCTTGTGGAAAAAAATGTGGCAACAAGTTCAGGAAATGTGAACTGTCAGATATGCTTGACTTGAACAGCCAATATCAGAGAGACATTGACTCAAGTGTGAAAGAAATAGATTTAAATTGCAGTTCAAGCTTTTGGGGACAATAA 1032 0.4205 MDLQNVQNQTMRLVLSTDAKPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKNSPLETCSDNKQQGFSEIKSSDGHCSREICTGTQNQMNESLKIAEALQMQMEVQRKLYEQIEVQRHLQLRIEAQGKYLQSVLSKAHETLARYDSSTTGIEVAKSELSQLVSIINNACPTSPISELTETRGLSLNCGEMKQDRGTMCSLESSLTSSESSGRTEVREPLDEAEKPQKTNGIISVELPLMEIHPEEGTAFKGDTSEGRKRSAGTDSNGCCVDQPCGKKCGNKFRKCELSDMLDLNSQYQRDIDSSVKEIDLNCSSSFWGQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02852 343 Pfam MYB-CC type transfactor, LHEQLE motif 118 164 IPR025756 -
Viun3g02852 343 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 75 IPR006447 GO:0003677
Viun3g02852 343 MobiDBLite consensus disorder prediction 222 236 - -
Viun3g02852 343 Pfam Myb-like DNA-binding domain 22 73 IPR001005 -
Viun3g02852 343 SUPERFAMILY Homeodomain-like 19 76 IPR009057 -
Viun3g02852 343 Coils Coil 120 140 - -
Viun3g02852 343 FunFam Myb family transcription factor 19 77 - -
Viun3g02852 343 MobiDBLite consensus disorder prediction 222 255 - -
Viun3g02852 343 Gene3D - 19 77 - -
Viun3g02852 343 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 273 IPR044848 GO:0003700
Viun3g02852 343 MobiDBLite consensus disorder prediction 268 290 - -
Viun3g02852 343 MobiDBLite consensus disorder prediction 269 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02852 Viun-Chr3 33933924 33935928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02852 11 302 G2-like Transcription Factor Family AT1G69580 49.835 3.98e-78 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun3g02852 Myb_DNA-binding 1.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02852 - - gmx:100805252 530.02