Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02850 ATGAAAGCGTGGCCTGCTAGTGTTGTATACTCTTCACAAGAAAACCTCACTCGATACGCTTCTTCGTCTTCCTACTCTTCTTCCCCTCCCTCAATGGGAATGGTCTATGCTGACATGGATTCTCTTTCTCTTTGCTCTAACTATGGTGTCGTTTCGTCTCATCAAGATTGTTATGTCTCCAACGGCGGCGGCTCCAACTGGGGTTTGCCCTTTATGAGGGAATGCCTTGGGAGGAACTTCGAGGAACATCCCAACAGTGATGGGGCGGAAGAGGGTAAAGGGTCTGATAGCAGTGACGATGGGGGTGGGGAAGACAGTGACAAAGTTAACCATAATGCTAATAACTTTAACGAAGAGAGCCCTAATGAGAATTCTAATAGCGGTTTGGGGCATTCCAAGCTCTGTGCAAGGGGGCATTGGAGACCGGCAGAAGATTCCAAGCTCAAGGAGCTTGTGGCTCTCTACGGCCCTCAGAACTGGAACCTCATAGCCGAGAAGTTAGAAGGAAGATCAGGCAAGAGTTGTAGGCTGAGATGGTTCAACCAGTTGGACCCGAGAATCAATAGGAGGGCTTTCAGTGAAGAAGAGGAAGAGAGACTAATGCAGGCACATAGGATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCAGTGAAGAATCACTGGCACGTTATAATGGCCAGGAAGTACAGAGAACAGTCCAGTGCTTACAGAAGGAGGAGGCTTAGCCAATCTGTTTACAGGAGAGTGGAGGAAAACACATCAAGCAGCAATGTCTCTAGAGACACAACCACTGCAGGGACAGAACCACCACCACCCTATTGTCTCAGTCTCCCCAACGGAGGACTTGGTAACAACAACATGCCAAGTTTCCCATATGCCGCTGCACCCTTCCATGGAGTAGTTCCTCCTCCTGCTGGTGGGGTTGAGTATGGCTTAAATGGCTCACCCCACATGGCTGCTTCCAAAGAAGCAATCTCAACCACCAAGCTGGCCCCTCCTCACATTGCCATGTATCCTCAACAAACACCGCTCGATTTCTTTTCAGGTGGTAGAAGCAATGACATGGTGGGAGAGTATTTTGGCCAGAACCATCAGCAAGCGTCTGGTTTTTACTCTCATTACCACCCCCAATATCTGATGCTAATGCAACAACACCAAAACAATCACAACTTTTACGGTTTCTCAAATTCCACAGCACAGATACTGGGCAGTGAAGCTTCACTATCATCAGTGGCAGAACGCAGAGATGAAGCCATGAGCAGTGACCCCCCAGATGCAATTCCTCCTCCATTTATTGACTTCCTAGGAGTAGGAGCCACATGA 1350 0.4844 MKAWPASVVYSSQENLTRYASSSSYSSSPPSMGMVYADMDSLSLCSNYGVVSSHQDCYVSNGGGSNWGLPFMRECLGRNFEEHPNSDGAEEGKGSDSSDDGGGEDSDKVNHNANNFNEESPNENSNSGLGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRVEENTSSSNVSRDTTTAGTEPPPPYCLSLPNGGLGNNNMPSFPYAAAPFHGVVPPPAGGVEYGLNGSPHMAASKEAISTTKLAPPHIAMYPQQTPLDFFSGGRSNDMVGEYFGQNHQQASGFYSHYHPQYLMLMQQHQNNHNFYGFSNSTAQILGSEASLSSVAERRDEAMSSDPPDAIPPPFIDFLGVGAT 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02850 449 MobiDBLite consensus disorder prediction 80 130 - -
Viun3g02850 449 SUPERFAMILY Homeodomain-like 137 230 IPR009057 -
Viun3g02850 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 238 IPR017930 -
Viun3g02850 449 ProSiteProfiles Myb-like domain profile. 137 183 IPR001005 -
Viun3g02850 449 PANTHER MYB PROTEIN-RELATED 125 270 - -
Viun3g02850 449 CDD SANT 140 181 IPR001005 -
Viun3g02850 449 Gene3D - 190 263 - -
Viun3g02850 449 FunFam MYB transcription factor 137 188 - -
Viun3g02850 449 SMART sant 188 236 IPR001005 -
Viun3g02850 449 SMART sant 136 185 IPR001005 -
Viun3g02850 449 CDD SANT 191 231 IPR001005 -
Viun3g02850 449 ProSiteProfiles Myb-like domain profile. 184 234 IPR001005 -
Viun3g02850 449 MobiDBLite consensus disorder prediction 256 282 - -
Viun3g02850 449 Pfam Myb-like DNA-binding domain 189 232 IPR001005 -
Viun3g02850 449 Pfam Myb-like DNA-binding domain 137 183 IPR001005 -
Viun3g02850 449 MobiDBLite consensus disorder prediction 256 275 - -
Viun3g02850 449 MobiDBLite consensus disorder prediction 80 107 - -
Viun3g02850 449 MobiDBLite consensus disorder prediction 108 130 - -
Viun3g02850 449 FunFam MYB transcription factor 190 266 - -
Viun3g02850 449 Gene3D - 137 188 - -
Viun3g02850 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 137 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02850 Viun-Chr3 33830721 33833151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02850 26 254 MYB Transcription Factor Family AT1G69560 53.782 2.45e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g02850 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02850 K09422 - gmx:100804537 590.882