Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02847 ATGGATGCTACCACAAGCTCTGAACTCCCCCCTGGCTTCAGGTTTCACCCAACGGACGAGGAACTAATCGTGTATTACCTTTGCAACCAAGCCACATCCAAGCCCTGTCCTGCTTCTATCATCCCAGAAGTGGATCTCTACAAGTTTGATCCATGGGAATTGCCAGATAAAACAGAGTTTGGAGAAAATGAATGGTACTTCTTTAGTCCACGAGACAGAAAGTACCCAAATGGGGTGAGGCCTAACCGAGCAACAGTTTCTGGGTATTGGAAAGCCACTGGCACAGACAAAGCAATCTATAGCGGATCTAAGCTTGTGGGGGTGAAGAAATCCTTAGTATTTTACAAGGGTAGGCCACCAAAGGGTGACAAGACTGATTGGATTATGCATGAGTACCGCTTGGCGGAATCAAAACAATCAGCTAACAGAAAAATTGGATCCATGAGGCTGGATGACTGGGTCCTGTGCAGGATTTATAAGAAGAAGAACATGGGAAAAACATTGGAGCACAAGGAGGCACACCCGAAAGTTCAAATCACTAATCTTATAGCTGAAAACAATGATGAGCAGAAAACGATGATGAACCTTCCCAGGACTTGGTCCCTCACTTACCTTTTGGATATGAATTACTTGGGTCCGATTTTATCTGATGGTTCCTATTGCTCAACCTTTGATTTTCAAATCAGCAATGCCAATATTGGAATTGACCCCTTAGTAAAATCTCAACCCGTTGAAATGGGCAACAATTATGTAGCAGACTCGGGGAAGTACTGA 774 0.4406 MDATTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDLYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKLVGVKKSLVFYKGRPPKGDKTDWIMHEYRLAESKQSANRKIGSMRLDDWVLCRIYKKKNMGKTLEHKEAHPKVQITNLIAENNDEQKTMMNLPRTWSLTYLLDMNYLGPILSDGSYCSTFDFQISNANIGIDPLVKSQPVEMGNNYVADSGKY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02847 257 Gene3D NAC domain 18 166 IPR036093 GO:0003677|GO:0006355
Viun3g02847 257 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Viun3g02847 257 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Viun3g02847 257 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Viun3g02847 257 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 180 - -
Viun3g02847 257 FunFam NAC transcription factor 18 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02847 Viun-Chr3 33676977 33678467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02847 1 225 NAC Transcription Factor Family AT1G69490 65.254 1.55e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun3g02847 NAM 6.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02847 - - gmx:100785110 474.167