Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02839 ATGGCTGCTGTATTTTCTGCATGTTCAGGTTCTTCTTCTCTTTTTCAAGGCAGAAACTTCTTCCCCTTTGCAACCAAAGGGTCTTCTTCTCTACACCTCAAAAGGCCACTCACTGCCAAATGTGTAGCTTCTCTGGGAACTGAGATATCAGTGCCTCCAGCAGTTGACACTTTCTGGCAGTGGCTCAAGGAAGAGGGTGTTATCTCTAACAAAACTCCAGTGAAGCCTGGTGTGGTGCCAGAAGGCCTAGGACTGGTTGCACTCAAAGACATTTCTAGGAATGAGGTTGTGTTACAGGTGCCCAAGAGGCTGTGGATTAACCCTGATGCTGTGGCAGCTTCAGAGATTGGGAAAGTTTGTAGTGGATTGAAGCCTTGGTTGTCTGTTGCATTGTTTCTGATAAGAGAGAGATCAAAGGATGATTCTCTTTGGAAGCACTACTTCGGTATTCTGCCCAAGGAAACTGACTCTACAATATACTGGTCAGAGGAGGAGCTCTCTGAACTAAAAGGGACTCAACTTCTGAACACAACACTGAGTGTGAAAGAGTATGTGAAGAACGAATTTAGGAGACTGGAAGAAGAAATTATACTCCCTAATGGGAAGCTTTTCCCTTCTCCTATTACAATTGATGACTTCTTCTGGGCATTTGGAATTCTGAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCATTAGCTGACTTGATAAACCATAGTGCCAGAGTAACTACAGAAGAACATGCTTATGAAATTAAAGGACCAGCAGGTCTTTTCTCCTGGGATTACCTATTTTCCCTGAGGAGCCCCCTTTCTCTCAAGGCTGGTGACCAGGTGTATATCCAATATGATTTGAATAAAAGCAATGCGGAGCTGGCTCTGGACTACGGTTTCATTGAACCAAATGGAGAGCGGAATGCATATACCTTGACACTGCAGATATTTGAGTCAGACCCCTTTTTTGGTGACAAATTAGACATTGCTGAGTCCAATGGTTTTGGTGAGACAGCATACTTTGACATCTTCTACAACCGCCCACTTCCACCGGGGCTGCTTCCATATCTGAGACTAGTAGCTCTAGGGGGCACTGATGCTTTCCTTTTAGAGTCAATATTTAGAAATTCCATTTGGGGTCATCTTGAATTGCCTGTGAGCCGTGACAATGAGGAGCTAATATGCAGAGTCCTTAGAAAGACCTGCAAAACTGCCCTTGCTGGTTATCATACAACCATTGAAGAGGATCAAAAGTTGAAAGAAGCTAAGCTAGATTCAAGGCTTGCTATAGCAGTGGGAATTAGAGAAGGGGAGAAGCAGCTCCTGCAGCAAATTGACGAGATCTTTGAGGAGAAAGAATTGGAATTGCCCCAGTTAGAATATTATCAGGAAAGGAGGCTCAAGGACCTTGGACTTTGCGGGGAAAGTGGTGATATCCTTGGGGACCTTGGAAAATTCTTTTAG 1473 0.4413 MAAVFSACSGSSSLFQGRNFFPFATKGSSSLHLKRPLTAKCVASLGTEISVPPAVDTFWQWLKEEGVISNKTPVKPGVVPEGLGLVALKDISRNEVVLQVPKRLWINPDAVAASEIGKVCSGLKPWLSVALFLIRERSKDDSLWKHYFGILPKETDSTIYWSEEELSELKGTQLLNTTLSVKEYVKNEFRRLEEEIILPNGKLFPSPITIDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTEEHAYEIKGPAGLFSWDYLFSLRSPLSLKAGDQVYIQYDLNKSNAELALDYGFIEPNGERNAYTLTLQIFESDPFFGDKLDIAESNGFGETAYFDIFYNRPLPPGLLPYLRLVALGGTDAFLLESIFRNSIWGHLELPVSRDNEELICRVLRKTCKTALAGYHTTIEEDQKLKEAKLDSRLAIAVGIREGEKQLLQQIDEIFEEKELELPQLEYYQERRLKDLGLCGESGDILGDLGKFF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02839 490 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 313 483 IPR036464 -
Viun3g02839 490 Gene3D - 305 469 IPR036464 -
Viun3g02839 490 Pfam SET domain 82 288 IPR001214 GO:0005515
Viun3g02839 490 Pfam Rubisco LSMT substrate-binding 322 445 IPR015353 -
Viun3g02839 490 ProSiteProfiles SET domain profile. 65 289 IPR001214 GO:0005515
Viun3g02839 490 Gene3D set domain protein methyltransferase, domain 1 51 304 - -
Viun3g02839 490 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 15 488 IPR011192 GO:0009507|GO:0030785
Viun3g02839 490 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 54 432 - -
Viun3g02839 490 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 303 - -
Viun3g02839 490 SUPERFAMILY SET domain 53 310 IPR046341 -
Viun3g02839 490 SMART set_7 70 295 IPR001214 GO:0005515
Viun3g02839 490 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 305 469 - -
Viun3g02839 490 PIRSF RMT_SET 1 489 IPR011192 GO:0009507|GO:0030785
Viun3g02839 490 CDD SET_RBCMT 74 304 IPR044431 GO:0016279|GO:0018022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02839 Viun-Chr3 33433912 33436795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02839 58 244 NAC Transcription Factor Family AT3G56570 27.919 2.47e-08 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Viun3g02839 SET 4.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02839 K00592 - gmx:100818113 872.848