Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02831 ATGGCAAACAAGAGAAAAAGATGGGAATGTGAAGAAGGAGGGGAGAAGAAGAGTGAAGAAGCGAACACAGAATGGGAAAAACTAAGGGAAGAAGCAGCTTCAATGGCTGCTGCTATTCTTGGAGCTAGAAGAGCTAACAAACGTTACATTGGGGTGAGACAAAGACCCTCTGGGCGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGACTTTGGTTAGGCACTTACGACAATGCCGAAGATGCTGCAAGAGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACAAATTTCTTTCCTTCCCAATCTTCTCCTTCTGTTTCTGCTCTTCCTCCAAAGATTGCCAAACTCCTCTTTCTTAGACTCAAAGCTAGAAACTTTGACCCTCGTTTTCCGAGTAACCACTATGATCAAGAAACCAAAGTAGAACCTCAACCTCAACCTCAACCAGAAGCAGAACCTAAATTATATCTCCAAACAGAAGAACCCCACTTTGAGAATTTTGTAGACATGGAAGGAAATGGGATTGTTGAAGAAAGTTATTATGGTGCTAGGTATAGTTCTTCTGCCATAACTACTTGTGACTATGGCTGTGGAGCTAGTGAAGAAGATTCTAACCAGAAGGGTAGCGGGGAAGATTTAAGCTTCGGGTATAACTTTGCTGAGAATGTTTATGATGAAGAGAAGAAGATTGTGAGTGGTAAAGGAGAGTTTGAAGGTTGTGATTTTCAGTTTTTGGAGTCTTGTGGATCACTGAGTTACTCTTTTTCTCCGTTTGAGATAGCAGAGGAGATGTTGGGAGCGATAGAGGAAAACAAATATTACGATGTTGATGATTCAGTGTTAGGCAGAGAAAGTTTGATGATGAAGTATGAACGTAAATTCTCTGCTTGTTTTTACACCTTAACAGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACAAGAGAATGGAAAGGAATTGGAAAATTTTTTAGGATGGTAA 1002 0.4142 MANKRKRWECEEGGEKKSEEANTEWEKLREEAASMAAAILGARRANKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDNAEDAARAYDEAARLLRGANTRTNFFPSQSSPSVSALPPKIAKLLFLRLKARNFDPRFPSNHYDQETKVEPQPQPQPEAEPKLYLQTEEPHFENFVDMEGNGIVEESYYGARYSSSAITTCDYGCGASEEDSNQKGSGEDLSFGYNFAENVYDEEKKIVSGKGEFEGCDFQFLESCGSLSYSFSPFEIAEEMLGAIEENKYYDVDDSVLGRESLMMKYERKFSACFYTLTGVSECLRLQVGQENGKELENFLGW 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02831 333 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Viun3g02831 333 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Viun3g02831 333 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Viun3g02831 333 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Viun3g02831 333 CDD AP2 47 104 IPR001471 GO:0003700|GO:0006355
Viun3g02831 333 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Viun3g02831 333 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Viun3g02831 333 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Viun3g02831 333 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Viun3g02831 333 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g02831 333 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 22 301 - -
Viun3g02831 333 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02831 Viun-Chr3 33284287 33285288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02831 44 124 AP2-EREBP Transcription Factor Family AT5G19790 64.634 5.18e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g02831 AP2 3.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02831 K09286 - gmx:100793940 400.979