Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02826 ATGGAGGAGAGGAAGTATCTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGAAAGTCTCTGGGGGGTCACATCAGGACCCATATCACTGAAGAAAGAACTAATGCTGATGCTGACATCTTCATCAAGTCCTCGGATGCTGTTAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTCGGGAACCCCATTTATGGCCTCAGAGAGAACCCAAAGAAAACAATGAGGTTCGTGCATTCCAGCGCTCGTGGTGGTGGTGCTGCTACCGGTGCTGCCGGTGCCAACTATGAAAAGGAGGAGAGGTTCTGCAAAGAATGCGGGAAAGGTTTCCCATCGCTGAAGGCTCTGTGTGGTCACATGGCTTGTCACTCGGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGACAGTCAATCTGATACCGAGACCTGTGCTCCATCTCATCCAAGGAGATCCAAGAGAATGAGGGTCAAGACCATTAACCTTTCCAATCACCCTTTTTCTTCTTCTTCTCCTTCTTCTTCTTCTGTTCCCTTCGCCAATGGCTCTTCAACCGTTTCAGAGGTGGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGCTGCTGTCTAGAGATTCTACCTTCAAGGGTCGTTTTGCTTCGGTTACCGAATGTTCTGATAACAACTCAGTTGTTCTAGAAGCAAAATCATCCTCTCCTGATACCCGGATTGCTGTCACCAATGGTTCTAGATATTTCAAACATGGTCCCAAAACCAAAATGGTAGACTCTGATGTCTCAACTGATGAGTTTAAGTGGCCCAAAATGGGAGATAAGTCAAGCAAATACGCTGCAACTTTAGTAAAGAAATTAGTGATGGAGGATTTGGATTATGATGGAACAGAAGGAACTGCAAGGAAGTTTGATTCAAGAAAGAGAAACAACTATGAGTCTCTTGATAACAATCCAGTTGGTGGTTCTAGCAAGAAGATAGCAAGTGGTTTTGGTAATGAAGTATATGGGAATGGCACAAAGGGCTGGAAGTATGAGTCTTTGGAGGGTGAAAGGGACTATGATTCTTATGATTCAATTGAGGAGAGCCATGAAAACAGTTCCGAGACAGAATCTTATCCTGCTCCCAGGTCTCATAACAGCAAGGTCCTCAATGGAAAGAAGTCCACAAGCAAGGCGAAGAAGAAGTTGAAGTCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGTCAAGCCTTGGGAGGACACAAAAGATCCCATTTCATTGGAGGGTCTGAAGAAAACACTCTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCCTGATTGATCTAAATCTACCTGCTCCTGTTGAGGAATAA 1404 0.4444 MEERKYLCKYCSKRFPCGKSLGGHIRTHITEERTNADADIFIKSSDAVKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSSARGGGAATGAAGANYEKEERFCKECGKGFPSLKALCGHMACHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCAPSHPRRSKRMRVKTINLSNHPFSSSSPSSSSVPFANGSSTVSEVEQEQEEVARCLMLLSRDSTFKGRFASVTECSDNNSVVLEAKSSSPDTRIAVTNGSRYFKHGPKTKMVDSDVSTDEFKWPKMGDKSSKYAATLVKKLVMEDLDYDGTEGTARKFDSRKRNNYESLDNNPVGGSSKKIASGFGNEVYGNGTKGWKYESLEGERDYDSYDSIEESHENSSETESYPAPRSHNSKVLNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVEE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02826 467 MobiDBLite consensus disorder prediction 172 192 - -
Viun3g02826 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 412 434 IPR013087 -
Viun3g02826 467 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Viun3g02826 467 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Viun3g02826 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Viun3g02826 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Viun3g02826 467 MobiDBLite consensus disorder prediction 363 408 - -
Viun3g02826 467 Gene3D Classic Zinc Finger 1 57 - -
Viun3g02826 467 ProSitePatterns Zinc finger C2H2 type domain signature. 414 434 IPR013087 -
Viun3g02826 467 SUPERFAMILY beta-beta-alpha zinc fingers 2 33 IPR036236 -
Viun3g02826 467 SMART c2h2final6 101 123 IPR013087 -
Viun3g02826 467 SMART c2h2final6 412 434 IPR013087 -
Viun3g02826 467 SMART c2h2final6 6 28 IPR013087 -
Viun3g02826 467 MobiDBLite consensus disorder prediction 376 394 - -
Viun3g02826 467 MobiDBLite consensus disorder prediction 317 338 - -
Viun3g02826 467 Pfam C2H2-type zinc finger 412 434 - -
Viun3g02826 467 Pfam C2H2-type zinc finger 103 125 - -
Viun3g02826 467 Pfam C2H2-type zinc finger 6 28 - -
Viun3g02826 467 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 467 - -
Viun3g02826 467 SUPERFAMILY beta-beta-alpha zinc fingers 102 434 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02826 Viun-Chr3 33202940 33205257 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02826 1 467 C2H2 Transcription Factor Family AT1G26610 39.683 9.79e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun3g02826 zf-C2H2_6 5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02826 - - vun:114177115 902.894