Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02724 ATGCAGGTCAGGATTGTCTATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCATACTGTCATCACATTTCAAGTGGCTTCTGTTGATCCGAAGAATGTGGTGGTGCAACTAATGCGAAAAACTAAAGTTGCTGTTGCTCCAAAAAGCCGCAAAAGAAGTTTGGATTCACCAGGAGATTCACGTCAAGACTCCTCTAATAAAGAACACACTTCTAAGATGCTGCTTCGTTTACAAGATCCAAAAGGATTATGTAGTACCAGTACTCATGTCCAAGGAGTTGACCTTAATGTAGGGCTTACTACTGTTGCTTTTGTTCACCCTGAAACAGCCAAAAAATACTCATTCAGCATGCTTCAGTTGGTTTTGATAGTACCCAGAGTTTCCAAGGAAAACGTTAACATTTCAAGAACTAATATTATGAAAAACAGAGGTGGTTCAAGTACTAATGAAGCTGAAAATGTATATACTGACAATATAGAATATCGACAAGCAATTGTTCAGTTGATGATTTCAGAATCTGTGGGTGAAGGACATGTGATGGTAGCTAAGTCTCTTCGCCTTTATTTGAGAGCTAGCCTACGTTCATGGGTTTATTTGAAGGCATGCAATACTATTCTGGAAAAAAATATTCCTTCAACCTCTCTTTTTCCGTGTCAATTCAAACTACTAAGTCAGGAGAATTCTGTTGAGAAAGATGGTCTAAAAGTTTCTCATGACCGGAATAATCACATTGATAAAAAAGTCCAAGCGAAAGCTGCATCAGGTTTATTTGTGGATACTATAGATTGGTCAATCCAAAATAAAGTTCTAGAAGCTGTCTCCTATGAATCCAATTACAAAGCAGAGGAAGAAACTACAAATCAATCGCAGAATCACAGGGGATTACAGAATCTTGTAAGACTATGGTATATCACACAACTTAAGGCAATTACTTCTATTTCAGGTATGGAGGTTAGTTCCTTGATTATGGGTGATAAAACCTTGCTTCATTTTGAAGTAAGCTGTTACAAGCTTGGGAGTGATGGGAAGGCTCAGTTCGCCTATAGTCCTTCAGAGAATAGTAGCAATGCAGCTGAATTGTTGTTTTTATTGACATTTGGTGAAGAATATCTGCATAATGGGAAACTTCGTGCATATGAAGTTGGTCTTGGTGGAGAACATGATAACATTAATGTTGTGGACCTGAAGGTTTTTGAAAGGATGAAATTGTGTGATCCTGTGTCTATTATTTCTATAGAAGAGAGAACGTCTGAAGACAACATTAATTCAAATCTATCTCCCCTTGGCTGGATGGAGAAAACTGCGGATGATGTTATCAACAGAATGTTGATATTGTTATGTTCGGCATCTGGTTTGTGGTTTGGCTCACACAACTTGCCACTCCCTGGACATGTTCTCATATATGGACCACCTGGCTCTGGGAAAACTATATTAGCAAGAACTGTGGCAAAATCCCTTGAGAACCACGAAGACATCTTTGCACACATAATTTTTATTTCCTGCTCAAAATTTGCCCTTGAGAAGGTCCCAGTTATTCGCCAAGAACTTGCAAACCATGTAACTGAAGCTTTAAACCATGCTCCTTCTGTGGTTATCTTTGATGATCTTGATAGCATAATTTCTTCCCCTGACTCTGAAGGATCTCAGCAGTCAATATCTGTTGCTGGACTCACAGATTTTCTGGTTGACATCATGGATGAATATGGGGAGAAGAGGCAAAAATCATGTGGATTCGGACCAATAGCCTTCATAGCTTCTGCACAATCACTAGAAAAGATACCACAATCTTTAAGCTCTTCAGGAAGGTTTGACTTTCACATAAAGCTTCCTGCTCCTGCAGCCTCTGAGCGCAGGGCTATGTTGAAGCATGAAATACAGAGGCGTCACTTGCAGTGCGATGATGAGATCCTGCTTGACGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATTTGGAAATATTAGTTGACAGAACTGTTCATTCTGCTGTTCGCCGTTTTCTGCCATCTAATGCTTCCATTGATGTGCATGAGAGTCCAGCTATACTAAGGGAGGATTTCTCTCAGGCAATGCTTGATTTTCTTCCAGTTGCAATGCGTGATATTACAAAATCAGCTTCTGATGATGGCCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGACATTCGAAATGCTATTAAGGAGATGATAGAGCTGCCATCAAAGTTTCCAAAAATTTTTGCACAAGCACCTTTGAGGTTACGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTCATATCAGTAAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATTTTCTCTAAAGCAGCAGCTGCAGCACCATGTCTACTTTTTTTTGATGAATTTGATTCTATTGCCCCCAAGAGAGGGCATGACAATACTGGAGTAACTGATCGAGTTGTTAATCAATTTTTGACTGAGTTAGATGGTGTTGAGATTTTAACTGGTGTATTTGTGTTTGCTGCAACAAGTAGACCAGATTTACTTGATGCTGCACTGTTGAGACCTGGTAGGTTAGATCGTCTTCTATTCTGTGACTTTCCATCATGGCACGAGAGATTGGAAATTATTGCTGTACTTTCTAGAAAGTTGGCAATGGACAAAGATATTGATTTGACTACAATAGCTAATATGACTGAGGGATTCAGTGGAGCTGATCTCCAAGCTCTCCTCTCAGATGCGCAGCTTGCAGCAGTTCATGATGTTCTGGACAACGTGGATGCCTTAAGGACAGAAAAAACACCCGTTATTACTGATGCTCTTCTAAAGTTCACAGCATCCAAGGCTAGACCATCTGTTTCAGAAGAAGAGAAGAGAAGACTCTACAATATATATCACCAGTTCCTGGATTCAAAGAGATCTGTCGCTGCCCAGTCAAGAGACTCGAAAGGAAAGAAGGCAACTTTAGCTTGA 3021 0.4028 MQVRIVYEGMRFPLWLHGHTVITFQVASVDPKNVVVQLMRKTKVAVAPKSRKRSLDSPGDSRQDSSNKEHTSKMLLRLQDPKGLCSTSTHVQGVDLNVGLTTVAFVHPETAKKYSFSMLQLVLIVPRVSKENVNISRTNIMKNRGGSSTNEAENVYTDNIEYRQAIVQLMISESVGEGHVMVAKSLRLYLRASLRSWVYLKACNTILEKNIPSTSLFPCQFKLLSQENSVEKDGLKVSHDRNNHIDKKVQAKAASGLFVDTIDWSIQNKVLEAVSYESNYKAEEETTNQSQNHRGLQNLVRLWYITQLKAITSISGMEVSSLIMGDKTLLHFEVSCYKLGSDGKAQFAYSPSENSSNAAELLFLLTFGEEYLHNGKLRAYEVGLGGEHDNINVVDLKVFERMKLCDPVSIISIEERTSEDNINSNLSPLGWMEKTADDVINRMLILLCSASGLWFGSHNLPLPGHVLIYGPPGSGKTILARTVAKSLENHEDIFAHIIFISCSKFALEKVPVIRQELANHVTEALNHAPSVVIFDDLDSIISSPDSEGSQQSISVAGLTDFLVDIMDEYGEKRQKSCGFGPIAFIASAQSLEKIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRHLQCDDEILLDVAVKCDGYDGYDLEILVDRTVHSAVRRFLPSNASIDVHESPAILREDFSQAMLDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKIFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWHERLEIIAVLSRKLAMDKDIDLTTIANMTEGFSGADLQALLSDAQLAAVHDVLDNVDALRTEKTPVITDALLKFTASKARPSVSEEEKRRLYNIYHQFLDSKRSVAAQSRDSKGKKATLA 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02724 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 980 IPR027417 -
Viun3g02724 1006 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 691 IPR027417 -
Viun3g02724 1006 FunFam PeRoXisome assembly factor 884 959 - -
Viun3g02724 1006 FunFam Peroxisome biogenesis protein 1 419 613 - -
Viun3g02724 1006 Pfam AAA+ lid domain 905 942 IPR041569 -
Viun3g02724 1006 ProSitePatterns AAA-protein family signature. 853 871 IPR003960 GO:0005524|GO:0016887
Viun3g02724 1006 SMART AAA_5 749 885 IPR003593 GO:0016887
Viun3g02724 1006 SMART AAA_5 462 614 IPR003593 GO:0016887
Viun3g02724 1006 MobiDBLite consensus disorder prediction 47 71 - -
Viun3g02724 1006 CDD RecA-like_PEX1_r2 724 881 - -
Viun3g02724 1006 FunFam Nuclear valosin-containing protein-like 711 889 - -
Viun3g02724 1006 SUPERFAMILY Cdc48 domain 2-like 2 48 IPR029067 -
Viun3g02724 1006 Gene3D - 884 963 - -
Viun3g02724 1006 Gene3D - 411 613 IPR027417 -
Viun3g02724 1006 Pfam Peroxisome biogenesis factor 1, N-terminal 2 48 IPR015342 GO:0005524|GO:0005777|GO:0007031
Viun3g02724 1006 Gene3D - 714 976 IPR027417 -
Viun3g02724 1006 PANTHER AAA-FAMILY ATPASE 116 981 - -
Viun3g02724 1006 Pfam ATPase family associated with various cellular activities (AAA) 466 611 IPR003959 GO:0005524|GO:0016887
Viun3g02724 1006 Pfam ATPase family associated with various cellular activities (AAA) 753 880 IPR003959 GO:0005524|GO:0016887
Viun3g02724 1006 Gene3D - 1 50 - -
Viun3g02724 1006 Gene3D - 614 693 - -
Viun3g02724 1006 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02724 Viun-Chr3 28787616 28813362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02724 747 952 Calmodulin-binding Proteins AT3G56690 38.095 7.76e-37 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02724 K13338 - gmx:100803882 1701.8