Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02718 ATGAAAGATGGTGGTAGGAAGCAGGGTGCACCCTCACCCTGTGCTGCATGCAAACTCCTCAGGAGAAGGTGTGCTCAGGATTGTGTTTTTGCTCCTTATTTTCCTGCTGATGAACCCCACAAGTTTGCAAATGTTCACAGAGTCTTTGGTGCCAGCAATGTCAATAAGATGCTTCAGGAGTTACCAGAACATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTAAGGGACCCTGTGTATGGGTGTGTTGGGGCCATTTCATCTCTTCAGCAACAGATCGATGTGTTACAGACCCAATTGGCAGTGGCTCAAGCCGAAGCTGTGCACCTCAGAGTGCGCCAGAGTGCATCTCTCTACACTCCCACCAGCCCTACCAACACTGCCTCTCCATCATCCAAGAACATTCACTCACAATCCAAACCTATTTTTCACATCGACATGGACATGGTGGTGGACCACACCACCTACACTGATTCAATCTGGTGA 504 0.4921 MKDGGRKQGAPSPCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHRVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAVAQAEAVHLRVRQSASLYTPTSPTNTASPSSKNIHSQSKPIFHIDMDMVVDHTTYTDSIW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02718 167 Coils Coil 92 112 - -
Viun3g02718 167 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Viun3g02718 167 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 138 - -
Viun3g02718 167 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02718 Viun-Chr3 28702733 28705963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02718 1 167 AS2 family AT1G31320 73.684 2.81e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun3g02718 LOB 5.9e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02718 - - vum:124847068 307.76