Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02710 ATGGAAAGAGGCAGAGGCAGTTACGGTGGCCGTAGCAGTTACCGCGGCCGTGGCAGTGGCAGTTATGGTGGCGGTGAGGGCAATGCTGGTCGTAGCAGTTACGGCGGACGTGACAGTTACGGCGGCCGTAGAGGAAGGTTCTACCAACGTCCCCAGTTAAGTGGTAGCAATGAACACAGGTCTCCTTCCCAAACACAGCCACAACTACGGTGGAAACCGAGGTTAAATCCTTCTTCCCCGGGTGAATCTTCAGAACCACATGCTTCTCAACCTCGACCTGAAACTGAAACTGAAACTGGAATTGAAACTGAAAAAGAAACAATTCAAAATCCAGACGTGGGATCTTTGAAGATATCAGAGGAAAAAGCAGAGAGCATGAGACCAATGCGTAGGCCTGACAAAGGGGGAAAAATGGCAGCTAAGAGAAACAACCTTGAGGTGAACCATTTCCTTGTTGAGTTCGATGAAAAGAGAGTAATATTCCAGTATAACGTGGATGTGAAGGCCAAGGCTCCGGCCATGAACCATCGGCCTCAGAAGATTTCCAAGTTTCTTCTGTCGTCGATTCGGGATAAGCTGTTTTCCGATCACGCGTACCCCAGTTCGGCGTACGACGGCGACAAGAGCATATTCAGCTCGGAGCGGTTGAAGGAAGGAACCTTCGAAGTGGAGGTGGTGAGAGGTGGGGACGCAAGAACGCTTTGCTATTCGGTCACTCTTACACTTGTGAAGGACCTTGAACTCCGGAAGTTGAGAGATTACTTGAGTGGAAAGGTTCCTGGGATTCCTCGAGATGTTTTACAGGGCTTGGATTTGGTGGCGAAGGAGAATCCCGCTAAGCAGTGTGATACGGTTGGGTGCTGCTTCTTTCCCAAGGATCATCCCATAAGTCCGATAAACTCTAAAGGGATAATTGCAACTGGAGGATTTCAGCAGAGTCTTAAGCCAACTTCTCAGGGCTTGTCCTTGTGCCTAGACTTTTCCGTTCTGTCGTATTTTGGGGAGGAGAAACCGGTGTTGGAGTTTCTGCACGAACAGATTGAGAAGTTCGATTTGAAGATGTTTTCCAAGTTCAAGAAAAAAGTTGAGGATTTACTTGTGGGGTTGAAAGTCAATGTAACCCACCGGATGACGAAGCAGAAATACACTATTACAAAGTTGACACCCATGGTTACGAGCAAGATCAGATTCCCTGTTTTTGACACTGAGGGGCGGAATCCAGCACGGGAATGTAGTCTGATTGAGTACTTTTCAAGGAAGCATAAGGTGGAGATTCAACACACGGAAATTCCTGCCTTGGATTTTGGAGGCAACAAGATGAATTATGTGCCGATGGAGTTGTGCGTCTTGATCAAGGATCAGAGATGCCCCAAAGAGAACTTACTGAATACAAATGCTGGCAGTGTGTTGAGAAACATGTCGCGGGCTACTGCAGGAGAAAGGCGAAGTAAAATCTGCACTATAGTGGAATCAGAGGAAGGACCGTGTGGAGGTGGTGTTATTGAGAGTTTTGGCATGCGTGTGGGCACTTCCATGACAAAAGTGACTGGACGAGTAATTCAGCCCCCAAAATTGAAGATAGCTAATCGAAAGGGTGGGATTATTAGTATGGCACTGGAAGTGGGGAAACCACAGTGGAGTCTGAAGGGAAGATCAATGGTGGAAGGGAAGCCGCTTAAGTGTTGGGGCATTCTTTATTTTTCTGATTCCAAGTGCCAATTCAAAAGCGAACGCTTCATTACGAATCTTTGTAACAAGTGCGAATTACTCGGCATTAAAATGGAGGAGCCAGCTTGTTCTAAAGAATATTCCATGTCTACTCTTCGCGAATACGATTCGCTGTGTGAGTTACTTCAAGAAATTGATTCTCAGGTTCAAAAGGAACGTAAACAACGGCTGCAGATTCTTCTCTGTGTGATGGCCGACAAAGATTCAGGTTACAAGAGCCTCAAATGGATCGCTGAGACCAAGGTTGGGGTGGTGACACAATGCTGCTTACGTTCTCATGCTATCGATTCGAAGGATCACTTCCTTACAAATCTCGCCCTCAAGATGAATGCAAAAATTGGAGGAAGTAACGTAGAGCTCATGAACAGGCTTCCAAACTTTGACGGCGAAGGTCATGTTATGTTCATAGGTGCTGATGTTAACCATCCACCTTCCAGAGACACCACCAGTCCTTCAATTGCTGCTGTAGTTGCCACTGTAAATTGGCCTGCTGCAAATCGCTATGCTGCACGTGTTTGTGCTCAAGGTCACCGGGTTGAGAAAATTTTGAACTTTGGGAGAATTTGCCTTGAACTAGTATCTCATTACAAGAAGCTGAACAAAGTGTGGCCAGAGAAAATTGTTATCTTTCGAGACGGCGTGAGCGAAAGTCAATTTAACATGGTTCTCACGGAGGAGCTGCAAGATTTGAAATCAGTGTTTGGTGACTCAAATCACTCGCCAACCATCACTCTTATTGTTGCACAAAAGCGACATCAAACTCGATTTTTTGTGAAGGGTGAGAGTTTCAATGTGTTACCTGGAACAGTTGTGGACACAAAAGTGGTGCATCCTTTTGAATTTGACTTCTACCTTTTTAGTCACATGGGGAAATGGGGCACAAGCAAGCCCACTCATTATCATGTGTTATGGGATGAACACAAATTTACCTCTGATGATTTGCAGAAACTGATATACGAAATGTGTTTTACCTTTGCAAAGTGCACTGGACCTGTTTCTTTAGTCCCTCCAGTCTACTATGCTGATCTAGCTGCATACAGAGGCCGTGTTTACTATGAAGCCATGAATGAAGCCAAACCTGATCGCTCTGCCACCACTGGATCTTCTTCGTCGGTTTCTGGTTTAAATGATGAAGAGTGTTACAAGTTGCACCCCGACGTGGAAAACCTTATGTTCTTCATTTGA 2913 0.4579 MERGRGSYGGRSSYRGRGSGSYGGGEGNAGRSSYGGRDSYGGRRGRFYQRPQLSGSNEHRSPSQTQPQLRWKPRLNPSSPGESSEPHASQPRPETETETGIETEKETIQNPDVGSLKISEEKAESMRPMRRPDKGGKMAAKRNNLEVNHFLVEFDEKRVIFQYNVDVKAKAPAMNHRPQKISKFLLSSIRDKLFSDHAYPSSAYDGDKSIFSSERLKEGTFEVEVVRGGDARTLCYSVTLTLVKDLELRKLRDYLSGKVPGIPRDVLQGLDLVAKENPAKQCDTVGCCFFPKDHPISPINSKGIIATGGFQQSLKPTSQGLSLCLDFSVLSYFGEEKPVLEFLHEQIEKFDLKMFSKFKKKVEDLLVGLKVNVTHRMTKQKYTITKLTPMVTSKIRFPVFDTEGRNPARECSLIEYFSRKHKVEIQHTEIPALDFGGNKMNYVPMELCVLIKDQRCPKENLLNTNAGSVLRNMSRATAGERRSKICTIVESEEGPCGGGVIESFGMRVGTSMTKVTGRVIQPPKLKIANRKGGIISMALEVGKPQWSLKGRSMVEGKPLKCWGILYFSDSKCQFKSERFITNLCNKCELLGIKMEEPACSKEYSMSTLREYDSLCELLQEIDSQVQKERKQRLQILLCVMADKDSGYKSLKWIAETKVGVVTQCCLRSHAIDSKDHFLTNLALKMNAKIGGSNVELMNRLPNFDGEGHVMFIGADVNHPPSRDTTSPSIAAVVATVNWPAANRYAARVCAQGHRVEKILNFGRICLELVSHYKKLNKVWPEKIVIFRDGVSESQFNMVLTEELQDLKSVFGDSNHSPTITLIVAQKRHQTRFFVKGESFNVLPGTVVDTKVVHPFEFDFYLFSHMGKWGTSKPTHYHVLWDEHKFTSDDLQKLIYEMCFTFAKCTGPVSLVPPVYYADLAAYRGRVYYEAMNEAKPDRSATTGSSSSVSGLNDEECYKLHPDVENLMFFI 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02710 970 ProSiteProfiles PAZ domain profile. 337 452 IPR003100 GO:0005515
Viun3g02710 970 MobiDBLite consensus disorder prediction 89 105 - -
Viun3g02710 970 SUPERFAMILY PAZ domain 332 490 IPR036085 GO:0005515
Viun3g02710 970 SUPERFAMILY Ribonuclease H-like 619 930 IPR012337 -
Viun3g02710 970 Gene3D - 705 970 IPR036397 GO:0003676
Viun3g02710 970 SMART PAZ_2_a_3 337 469 IPR003100 GO:0005515
Viun3g02710 970 Pfam PAZ domain 344 462 IPR003100 GO:0005515
Viun3g02710 970 SMART Piwi_a_2 635 929 IPR003165 GO:0003676
Viun3g02710 970 MobiDBLite consensus disorder prediction 1 137 - -
Viun3g02710 970 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 140 933 - -
Viun3g02710 970 Gene3D paz domain 331 457 - -
Viun3g02710 970 CDD PAZ_argonaute_like 338 451 - -
Viun3g02710 970 Gene3D - 519 697 - -
Viun3g02710 970 SMART DUF1785_2 283 335 IPR014811 -
Viun3g02710 970 MobiDBLite consensus disorder prediction 50 88 - -
Viun3g02710 970 Pfam Piwi domain 636 928 IPR003165 GO:0003676
Viun3g02710 970 Pfam N-terminal domain of argonaute 144 273 IPR032474 -
Viun3g02710 970 Pfam Argonaute linker 1 domain 285 328 IPR014811 -
Viun3g02710 970 MobiDBLite consensus disorder prediction 117 137 - -
Viun3g02710 970 CDD Piwi_ago-like 500 928 IPR045246 -
Viun3g02710 970 ProSiteProfiles Piwi domain profile. 635 929 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02710 Viun-Chr3 28537391 28540888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02710 59 951 Eukaryotic Initiation Factors Gene Family AT1G48410 32.526 1.73e-139 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02710 K11593 - gmx:100805250 1142.87