LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g02683	ATGGCCATGTTGCAGACATGGAAAGCTGCTCTCACTCAAGTGGCAGACATAGTTGGGTGGGAATCAAAGAATTTTAGGACGGAGAGTGAACTCATTGAGGAAATTGTCAAAGATGTTATGCAAAAACTAAACCATATGTATCCAGCTGAAGTAAAAGAAACACTTGTTGGAATTGATCAAAATCTTGCTCCTATTGAATCATTATTGAGACTAAGGTCAAAAGAAGTTCGCATAATTGGAATTTGGGGAATGGGTGGATTAGGTAAGACAACCATTGCGAGCGCTTTATTTGCCAAATTATCATCTCAGTTTGAAGCTAGTTGCTTCTTGGCAAATGTAATGCTAGAACATGAAAAGAAAGGACTTGATTATTTGCGCAATAAACTTCTTTCTGAGATATTAGAAGATGTGAATCCCCATATAAGCACTTCCAAAGTGAGATCTACGTTTGTTATGAAGAGGCTTAGACAGAAAAAGGTTTTGATAGTGCTTGATGATGTGGACGATTCAAAGAAACTCGAAGATCTTGTTGCACAACATGATTGCTTGGGATCTGGGAGTAGGGTCATTGTCACTACAAGAGACAAGCATGTCCTTAGCAAAGGGGTAGATGCAATCTATGAGGTTAAGGGATTGTCCCTTGATCAATCTGTTAGGCTTTTTAGTTTAAATGCCTTCGGGAAAACTTATCCTGAAAGGGGCTTTGAAATGCTGTCTAAACAAGCGGTTGATCATGCAAATGGAAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAGCAATGGGACAATGCTCTGAGAAAATTCAAGAAGGTTCCCAATGCTGAAATTCAGAATGTCTTGAGATGGAGTTATGATGGATTAGATTATGAACAAAAAAACATGTTCCTGGACATTGCATGCTTTTTCAGAGGAGAAAATAAAGAAAATGTTATAAGGTTGCTCGAATTTTGTGGTTTCTATGCATATATTGGTATAAAAATCCTTCTAGAAAAAGGTCTTATAACTTTTTCTGATAATGGTGACGTCTGTATGCATGAATTGATACAGGAAATGGGTTGGGAAATTGTTCATCAGGAGTCTATCAAAGATCCTGGAAGGCGTAGCCGATTGTGGGATCTTAAAGAAATCTATGATGTGTTGAAAAATAACAGGGGAACTGAAGCAGTTGAAGGCATAATCTTAGATGTGTCTCAAATAAGAGTCCTGCTGCTGAGCTATGAGACTTTCTCAAGGATGATAAATATGAGATTTCTCAAATTCTATATGGGGAAGAGTAGGAAATGCAATTTGCACCTTCCTTCAGGTCTTGAATCCTTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTCTGCCATCAACTTTTTGTCCTGACAACCTTGTTGTGCTTTCAATGATGGAAAGCTACGTTGAGAAACTTTGGGATGGAATCAAGTGTCTTCCAAGCTTGAAGGAGATGAACCTCCATGCCTGCAAAAATTTAACTAATCTCCCAGATTTATCTCAGGCACCAAATCTTGAAACTATAGATGTTTCTAATTGCACAAGTCTGCTTCATGTTCCCTTATCCATCCAATATGTCAAGAAGCTTCTTCTGTTTAACTTGGAATCCTGCAAGAGTCTCAAGAGTCTTCCAAGAAACATTCACTTAACTTCTCTTGATATGTTCATTCTCAGACGCTGTTCTAGTCTTGATGAGTTTTCATTGACTTCGGAGAACATGACACGCCTGGACTTGAGAGAAACAAAAATAGCAGATTTCCCAGAGACTGTTTGGCAGCATCTGAACAAGCTTGTTTACTTGAATCTGGAATCCTGCAACAAACTCAAGAGCCTTACAAGCAAGATTCACTTCAAATCTCTTCAAAGACTCAATCTGAGAGATTGTTCAATTCTTGAAGAGTTTTCTGTGACTTCGGAGAGCATGGAATACTTGAATTTGAGAGGCACATCAATAAGAGAATTGCCAACATCAGTTTGGCGCAATAACAAGCTTTATACTTTGGTTCTTCATTCCTGTAAAAAACTGGTGAGTTTTCCTGAAAGACCAAAACTTGAGGATTCATCTCTTGTATCCTTCTCTGAAAGGCCAAATATGCATGAACTATGGACTTTGTCATCCTTAGCAGATTTATCACTAAAGGGAAGCACTATTGAGAATTTACCTGCAAGCATCAAAGATCTTCCTAGTCTAAAAAAACTTACCTTGACTGAGTGCAAGAAGCTACAGTCCTTACCAAGCCTTCCACCATCTTTGGAAGACTTATCCTTAGATGAAAGTAATATTGTGTGCTTACCTGTAAGTATCAAAGACCTTTCTCATTTGAGAAAACTTGCCCTAATTAACCACAAGAAGCTTTTGACTCCACAGGATCTTCCACCATCTTTGAAAGCTCCATTACTCAGTGAAAGTAAAGTCGATCCACATCTTGTGAGCATGAAGGGTCTTTCTCAACTACAGATGTTTCCTCAGGTTAAGTGGAAAATGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTTTCACTAAGTGAAAGCAATATTAAGTTCCTGCCTGAAAGCATTAAAAATCTGTCACATATGAGGAAACTAGCCTTCACAAAGTGCACGAGGCTGCAGTATTTACCAGAGCTTCCGCCAAATTTGGAAGATTTGTTTGTAAGTGGATGTGACATTGAAAGCTTGCCGATAAGCATCAGAGATCTGGTTCACTTGCGAAAGATCACCTTAATTGAGTGCAAGAAGCTCAAGGCTCTACCAGAGCTCCCACAATGCCTGCAATCATTGTGTGCAGCTGACTGCAGATCACTTAAGATTGTTCAAAGTACAAAGAATATCTTAATAGAAGATAGGTATACATTCTATTGGAATTGCATAAACTTAGACCAAAAGTCACGCAACAACATCATTGCAGATGCACCCTTTGAAGCAGCTTTTACTTCTTTGAAAGAAAGAATACCTCTTGGACCTCTTATTTCTATTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTCAGCCACCAATCAACAAATTCTTCACTGGACATGGAAATTCCTCTAGAGTGGTTCCTTGACTCGATGTTCTTAGGTTTTGCTCTGTGCCTTGTAATTGGTGGTTTCCAACAGAACAGTTATGAAGGGTATGATCCAGATATCAATTGTTATCACTTTGTAAAATCTGCCTCCTACTCTGGCCCCAGTGATCCCTTTCTTGGACATTGCACAACTGTAATGCAGGTCCCTAGAGGTTTTAATTCAGATCATATATTTATATGCTACTATCCCACTTTTAATGCCTCCATATTACAAGATTTCAAGGATTTAAGCTTGTACTATGATGCCAATAACTTAAAACTCAGAGTAATCTTTAAATTCAAGGGTCCATCTCAACGGTTGGACATTGTTAAGAAGTGCGGGGTCAGACCTCTTTTGATCGCAAATACTGAAAGGCATCACATAGAAAGTGAATTGCAACCTGAATAG	3525	0.387	MAMLQTWKAALTQVADIVGWESKNFRTESELIEEIVKDVMQKLNHMYPAEVKETLVGIDQNLAPIESLLRLRSKEVRIIGIWGMGGLGKTTIASALFAKLSSQFEASCFLANVMLEHEKKGLDYLRNKLLSEILEDVNPHISTSKVRSTFVMKRLRQKKVLIVLDDVDDSKKLEDLVAQHDCLGSGSRVIVTTRDKHVLSKGVDAIYEVKGLSLDQSVRLFSLNAFGKTYPERGFEMLSKQAVDHANGNPLALKVLGSVLHSRNEQQWDNALRKFKKVPNAEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENKENVIRLLEFCGFYAYIGIKILLEKGLITFSDNGDVCMHELIQEMGWEIVHQESIKDPGRRSRLWDLKEIYDVLKNNRGTEAVEGIILDVSQIRVLLLSYETFSRMINMRFLKFYMGKSRKCNLHLPSGLESLPNKLMYLQWDGYPSKSLPSTFCPDNLVVLSMMESYVEKLWDGIKCLPSLKEMNLHACKNLTNLPDLSQAPNLETIDVSNCTSLLHVPLSIQYVKKLLLFNLESCKSLKSLPRNIHLTSLDMFILRRCSSLDEFSLTSENMTRLDLRETKIADFPETVWQHLNKLVYLNLESCNKLKSLTSKIHFKSLQRLNLRDCSILEEFSVTSESMEYLNLRGTSIRELPTSVWRNNKLYTLVLHSCKKLVSFPERPKLEDSSLVSFSERPNMHELWTLSSLADLSLKGSTIENLPASIKDLPSLKKLTLTECKKLQSLPSLPPSLEDLSLDESNIVCLPVSIKDLSHLRKLALINHKKLLTPQDLPPSLKAPLLSESKVDPHLVSMKGLSQLQMFPQVKWKMFHSLPELPPFLEEFSLSESNIKFLPESIKNLSHMRKLAFTKCTRLQYLPELPPNLEDLFVSGCDIESLPISIRDLVHLRKITLIECKKLKALPELPQCLQSLCAADCRSLKIVQSTKNILIEDRYTFYWNCINLDQKSRNNIIADAPFEAAFTSLKERIPLGPLISICLPGTEIPDWFSHQSTNSSLDMEIPLEWFLDSMFLGFALCLVIGGFQQNSYEGYDPDINCYHFVKSASYSGPSDPFLGHCTTVMQVPRGFNSDHIFICYYPTFNASILQDFKDLSLYYDANNLKLRVIFKFKGPSQRLDIVKKCGVRPLLIANTERHHIESELQPE	1174

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g02683	1174	SUPERFAMILY	"Winged helix" DNA-binding domain	282	388	IPR036390	-
	Viun3g02683	1174	FunFam	Disease resistance protein RPS4	393	584	-	-
	Viun3g02683	1174	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	7	582	IPR044974	GO:0006952
	Viun3g02683	1174	Gene3D	-	212	295	IPR042197	-
	Viun3g02683	1174	Pfam	C-JID domain	1010	1155	IPR045344	-
	Viun3g02683	1174	SUPERFAMILY	L domain-like	655	953	-	-
	Viun3g02683	1174	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	38	305	IPR027417	-
	Viun3g02683	1174	PRINTS	Disease resistance protein signature	246	260	-	-
	Viun3g02683	1174	PRINTS	Disease resistance protein signature	738	754	-	-
	Viun3g02683	1174	PRINTS	Disease resistance protein signature	154	168	-	-
	Viun3g02683	1174	PRINTS	Disease resistance protein signature	78	93	-	-
	Viun3g02683	1174	SUPERFAMILY	L domain-like	371	692	-	-
	Viun3g02683	1174	Gene3D	-	44	206	IPR027417	-
	Viun3g02683	1174	Gene3D	Ribonuclease Inhibitor	816	963	IPR032675	-
	Viun3g02683	1174	Gene3D	Ribonuclease Inhibitor	653	815	IPR032675	-
	Viun3g02683	1174	Gene3D	Ribonuclease Inhibitor	585	652	IPR032675	-
	Viun3g02683	1174	Gene3D	Ribonuclease Inhibitor	380	584	IPR032675	-
	Viun3g02683	1174	Gene3D	-	1	43	IPR035897	-
	Viun3g02683	1174	Pfam	NB-ARC domain	68	281	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g02683	Viun-Chr3	27830758	27835748	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun3g02683	868	934	WRKY Transcription Factor Family	AT4G12020	35.821	2.95e-06	50.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g02683	-		-	gmx:100797269	1915.58