Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02624 ATGGCCTCATCAGTCTCCTTCACCCTTTTCTTCGTCTGCATCTCTTTCTTTCACTTCCCACTCTTTTCATCACAATCAAGCGATTCATTCCCGAAAGAAGCCCTCCCCAGCAGGTATGGCTACCTACCAATCAGTCCTACTTCTGCTTCTGCGATTTTCTACGCTTTCTATGAAGCCCAAAACACCACTTTGCCACTCTCACAAACCCCACTTCTGATTTGGCTCCAAGGTGGCCCTGGCTGCTCCTCCATGCTTGGCAACTTCTACGAGCTTGGACCATGGCGAGTCACCCAATCCCTCACCCTTCACCCCAACCCTGGTTCTTGGAACAGAATTTTTGGCCTTCTTTTTCTTGATAGTCCCATTGGATCTGGCTTCAGTTTGGCCTCAACCCCACAAGAGATCCCAAGAGATCAAAACACCGTTGCCAAACACCTCTTTGCTGCCATAACCAACTTTCTTCAGCTCGATCCTCTTTTCAACCATCGCCCTATTTATATTACTGGAGAAAGCTATGCCGGCAAGTATGTGCCTGCAATTGGGTACTATATATTGAAGAAAAATGCAGACTTGGAGGGTTCAGAAAGAGTGAATCTGGCCGGTGTAGCTATTGGGGATGGGTTAACAGACCCCGAAACTCAAGTTCTGTCTCATGCTGTGAATGCTTACTATGCTGGATTGATCAACGAGAGGCAGAAGAATGAGTTGGAAAAAGCTCAACTGGAAGCAGTTGGGTTGATCCAGAAGAGGAATTGGAGTGAAGCAGCAGATGCGAGAAACAAGGTGTTGGGAATGTTGCAAGACATGACAGGGTTGGCTACTTTGTACGACTATAGAAGGAAGATTCCGTACGAGGATGATCTGGTTGAACGGTTCTTGAACATTGCGGAGGTGAAGAAGGCACTGGGGGTGAAGGAATCGTTTGTGTATGAGATATGCAGTGATGTTGTCGGGGAGGCATTACATGGTGATGTGATGAAAAGTGTGAAAGAGATGGTGGAATACCTGGTGAGGAAGAGCAGGGTGTTGCTGTATCAAGGTGAGTATGATTTGAGGGATGGAGTTGTCCAAACAGAGGTGTGGGTGAAGACGATGAAATGGGAAGGGATACCACACTTTCTCAATGCTGAAAGGAAGATATGGAAGGTCAATGGAGAGCTTGCTGGGTATGTGCAGAGTTGGACCTCTCTCACCAATGTTGTCGTTTTAGGAGCTGGTCATCTTCTTCCCACCGACCAACCTCTTCATTCTCAAGCTATGATTGAAGATTGGGTTCTCCAAAAGGGTTTGTTTCAAAACTTTCATAAGGCAAATGTATCAAGTAAGTCTATACTTGTTGAGTAA 1344 0.4628 MASSVSFTLFFVCISFFHFPLFSSQSSDSFPKEALPSRYGYLPISPTSASAIFYAFYEAQNTTLPLSQTPLLIWLQGGPGCSSMLGNFYELGPWRVTQSLTLHPNPGSWNRIFGLLFLDSPIGSGFSLASTPQEIPRDQNTVAKHLFAAITNFLQLDPLFNHRPIYITGESYAGKYVPAIGYYILKKNADLEGSERVNLAGVAIGDGLTDPETQVLSHAVNAYYAGLINERQKNELEKAQLEAVGLIQKRNWSEAADARNKVLGMLQDMTGLATLYDYRRKIPYEDDLVERFLNIAEVKKALGVKESFVYEICSDVVGEALHGDVMKSVKEMVEYLVRKSRVLLYQGEYDLRDGVVQTEVWVKTMKWEGIPHFLNAERKIWKVNGELAGYVQSWTSLTNVVVLGAGHLLPTDQPLHSQAMIEDWVLQKGLFQNFHKANVSSKSILVE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02624 447 Pfam Serine carboxypeptidase 37 425 IPR001563 GO:0004185|GO:0006508
Viun3g02624 447 Coils Coil 224 249 - -
Viun3g02624 447 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
Viun3g02624 447 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 414 IPR001563 GO:0004185|GO:0006508
Viun3g02624 447 SUPERFAMILY alpha/beta-Hydrolases 36 427 IPR029058 -
Viun3g02624 447 FunFam Carboxypeptidase 22 432 - -
Viun3g02624 447 Gene3D alpha/beta hydrolase 21 439 IPR029058 -
Viun3g02624 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 397 410 IPR001563 GO:0004185|GO:0006508
Viun3g02624 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Viun3g02624 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 105 117 IPR001563 GO:0004185|GO:0006508
Viun3g02624 447 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 128 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02624 Viun-Chr3 26818719 26820256 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02624 288 425 Calmodulin-binding Proteins AT2G22960 20.144 6.28e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02624 K09645 - gmx:100780822 746.503