Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02608 ATGGATTATTGCACAGAAGGGTCTTCTTACTATAACATTCTTGGTGTTAGTTCGGATTCTAGCGTGGAAGAGATAAAGCGCGCTTACAGAAAGCTTGCTATGCAATGGCACCCTGATAGATGGACAAAAACGCCTTCTTTGCTGGGCGAAGCCAAACACAGATTCCAGCAAATTCAAGAAGCCTATTCCGTGCTGTCGGACAGTAAGAAAAGAACTATGTATGATGCGGGTTTGTATGATCCTCAAGAGGAAGAGGACGAGGGGTTTTCTGATTTTTTGGAAGAAATGTTGTCTCTCATGGCTCAAGCGAGGAGAGAGAAAAAACATTACGATTTGAAAGAGTTGCAGGGGATGTTGATGGAAATTGGTAAAGGATTCGAGTGTTCTTCAATGTACTGTGGGGTGCCCTCTGTGATTGAGGAGTCTCGATGCTCAAAGAAGACTCGTTTAGACACAAGCACGGTGGAGAATAAGGGGCCACATTTTCAAGTACCTGATCTTAACCTCTATTGCAGTTAG 519 0.4374 MDYCTEGSSYYNILGVSSDSSVEEIKRAYRKLAMQWHPDRWTKTPSLLGEAKHRFQQIQEAYSVLSDSKKRTMYDAGLYDPQEEEDEGFSDFLEEMLSLMAQARREKKHYDLKELQGMLMEIGKGFECSSMYCGVPSVIEESRCSKKTRLDTSTVENKGPHFQVPDLNLYCS 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02608 172 Coils Coil 93 113 - -
Viun3g02608 172 PANTHER PUTATIVE, EXPRESSED-RELATED 5 137 - -
Viun3g02608 172 Gene3D DnaJ domain 2 114 IPR036869 -
Viun3g02608 172 PRINTS DnaJ domain signature 11 29 IPR001623 -
Viun3g02608 172 PRINTS DnaJ domain signature 29 44 IPR001623 -
Viun3g02608 172 PRINTS DnaJ domain signature 50 70 IPR001623 -
Viun3g02608 172 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Viun3g02608 172 CDD DnaJ 10 67 IPR001623 -
Viun3g02608 172 SMART dnaj_3 8 70 IPR001623 -
Viun3g02608 172 SUPERFAMILY Chaperone J-domain 8 81 IPR036869 -
Viun3g02608 172 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Viun3g02608 172 Pfam DnaJ domain 10 75 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02608 Viun-Chr3 26506714 26508101 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02608 5 76 C2H2 Transcription Factor Family AT1G74250 45.205 6.26e-14 67.0