Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02603 ATGGCCGGCGAACTCGCCGGAGACCACACACCAGAGCTCCTCTGTCTGGTCCACGACATCGCCGGAATGTGCGTCGACTCCTCCTCCGCCGCACCCATTGCCGCCGACGCCATGTTCCGCAAGGACTGTACCGATCTGGTTCGCCGGATCTCCCTCCTTACCCACTTGTTCGAGGAGATTAGAGAACTCAACAGCAACAACAACAACAGCAACAATGTTGTTGCTTCCGCTTCCTCGTCTTCTTCCTCATCTTCCGCCGCATCTTGGTCCTCTGATCTTATCTTCGCTCTTCAGTCTGCAAGAAGCTTGCTTTCCGTCGCCAGAAACTTCCGTTCCAATTGCTCCTCTGATGGAGCCGCAAAGACCATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAGAAACTGTTGAGTGATTTGCCGTATGACAATTTGGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACGCAATTGAAACGAGCCTCAGATAAATATGGGTTTATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCACTGACTGAAGAAATTAGTCAGGTTCTTTCCAAATCCGTAGGTGGATTGTACAAACAACACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTCCTAAAAACAATGGAGAGAATAATTGCAGCACAAATCGGCTTGGATCTCTCTTGGAAAGAGCAAGGAGCATCCCTGCTTCTTCTGAAGTTCTCTTTTTGAATGAATCTGATCCTGAAAGTCAAGAAATTTCTGAGACAAAAAGTCTACCTGAGGTTAAAAGGCCTGAAGCAATTGTGATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCTGTTATTGTGGCGACTGGTCAGACGTATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATACAACGTGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACACTCACACCAAATTATGTTTTAAGGAGCCTTATTTCTCAGTGGTGTATAGAGCACCATATCGAGCAGCCAACAGGACTAACTAATGGGAAAATAAAGAAGAGTGATGGGTCGTTCAGAGACGTTACGGGTGACATAGCAGCAATTGAAGCTCTGGTGCGGAAGCTCTCCAGCCGATCTGTTGAGGAGCGTAGAGCAGCCGTTACTGAAATCCGATCACTATCCAAACGAAGTACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTGAACCTTCTAACATCTGAAGATGTATTGACGCAAGACAATGCTGTTACTTCAATTCTAAACCTTTCCATTTATGAAAATAACAAAGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGTGCTGGAACCATGGAAGCAAGAGAAAATGCAGCAGCAACCCTCTTCAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGCGCGTCAGGAGCCATACCCGCATTGGTAGAATTGCTCCAAAACGGGAGTCCTAGAGGAAAGAAGGATGCAGCAACAGCATTGTTCAATCTATGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGAGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTGACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAAATTGCTATAGTAAAAGCCAGCACTATACCAGTTTTGATAGATCTTTTGAGGACCGGATTGCCTCGCAATAAAGAGAATGCAGCTGCTATTCTTCTGGCCTTGTGCAAAAGGGATGCCGACAATCTTGCTTGTATAAGTAGACTCGGTGCCGTCATACCTCTCTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTACTGGAGCATCTTCGTAAGTTGCAGCAACTTTGA 1971 0.4515 MAGELAGDHTPELLCLVHDIAGMCVDSSSAAPIAADAMFRKDCTDLVRRISLLTHLFEEIRELNSNNNNSNNVVASASSSSSSSSAASWSSDLIFALQSARSLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSDLPYDNLDISEEVKEQVDLVRTQLKRASDKYGFMISKMPSHELSQPLTEEISQVLSKSVGGLYKQHSCPENLSELDSIPKNNGENNCSTNRLGSLLERARSIPASSEVLFLNESDPESQEISETKSLPEVKRPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIEHHIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSRSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRKLQQL 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02603 656 Coils Coil 636 656 - -
Viun3g02603 656 FunFam RING-type E3 ubiquitin transferase 355 555 - -
Viun3g02603 656 Coils Coil 149 169 - -
Viun3g02603 656 Gene3D - 359 452 IPR011989 -
Viun3g02603 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 417 459 IPR000225 GO:0005515
Viun3g02603 656 FunFam RING-type E3 ubiquitin transferase 556 655 - -
Viun3g02603 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 458 500 IPR000225 GO:0005515
Viun3g02603 656 Gene3D - 555 655 IPR011989 -
Viun3g02603 656 Pfam Armadillo/beta-catenin-like repeat 489 527 IPR000225 GO:0005515
Viun3g02603 656 Pfam Armadillo/beta-catenin-like repeat 407 445 IPR000225 GO:0005515
Viun3g02603 656 FunFam RING-type E3 ubiquitin transferase 276 351 - -
Viun3g02603 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Viun3g02603 656 SMART arm_5 447 487 IPR000225 GO:0005515
Viun3g02603 656 SMART arm_5 570 610 IPR000225 GO:0005515
Viun3g02603 656 SMART arm_5 406 446 IPR000225 GO:0005515
Viun3g02603 656 SMART arm_5 529 569 IPR000225 GO:0005515
Viun3g02603 656 SMART arm_5 488 528 IPR000225 GO:0005515
Viun3g02603 656 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Viun3g02603 656 Gene3D - 453 554 IPR011989 -
Viun3g02603 656 CDD RING-Ubox_PUB 278 330 IPR045210 -
Viun3g02603 656 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Viun3g02603 656 SUPERFAMILY ARM repeat 376 650 IPR016024 -
Viun3g02603 656 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 499 541 IPR000225 GO:0005515
Viun3g02603 656 Pfam U-box domain 277 348 IPR003613 GO:0004842|GO:0016567
Viun3g02603 656 PANTHER U BOX DOMAIN-CONTAINING 38 652 - -
Viun3g02603 656 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Viun3g02603 656 SUPERFAMILY RING/U-box 276 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02603 Viun-Chr3 26323079 26326394 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02603 20 655 U-box Gene Family AT1G23030 60.681 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02603 - - gmx:100815448 1095.88