Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02602 ATGAGAAAACCTGCTTCTGATATCAAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTCATAGATTATATCAACAAACACGGCGAGGTTTGTTGGCGTACACTCCCTCAGGCTGCAGGTTTACTTCGGTGTGGCAAAAGTTGCAGACTGAGATGGATAAACTATCTAAGACCAGACCTTAAAAGAGGCAACTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCGCTACTTGGCAACCGGTGGTCACTTATAGCAGGGAGATTACCCGGTCGTACAGATAACGAAGTGAAGAACTATTGGAATTCTCATATAAAAAGGAAGCTAATTAGCAAAGGCATTGATCCAAATAATCATCGATTAGATCACAAAGTCCCTTTCCTTCAGAATCCACCCATGTCTGAAGATGCTTCAGAACCTTTTCGCACGAAACTTGTTGAAAAGAACGAGCCATGTAAATCACCTCGTCATGTTTATGGTGATGTCTCAGATGATGCAAGTGGCGAGGCTCAGTCATCGTATGCCCTTCCGGATTTAAACCTTGATCTCTCTATCGCCATTCCTTCAGAATCACGCACTGTTTCTGAAAACAATCTAAAACCCTTTCGTCAATCTTATTCATCCAGGAAACTGCCTCATGATTCTCCTTCAACACTTCTTCTGTTTCAGTAA 690 0.4203 MRKPASDIKDLNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIKRKLISKGIDPNNHRLDHKVPFLQNPPMSEDASEPFRTKLVEKNEPCKSPRHVYGDVSDDASGEAQSSYALPDLNLDLSIAIPSESRTVSENNLKPFRQSYSSRKLPHDSPSTLLLFQ 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02602 229 FunFam MYB transcription factor 67 127 - -
Viun3g02602 229 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Viun3g02602 229 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Viun3g02602 229 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Viun3g02602 229 Gene3D - 5 66 - -
Viun3g02602 229 MobiDBLite consensus disorder prediction 154 176 - -
Viun3g02602 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 160 - -
Viun3g02602 229 CDD SANT 68 111 IPR001005 -
Viun3g02602 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Viun3g02602 229 CDD SANT 15 60 IPR001005 -
Viun3g02602 229 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Viun3g02602 229 Gene3D - 67 131 - -
Viun3g02602 229 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Viun3g02602 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Viun3g02602 229 MobiDBLite consensus disorder prediction 154 169 - -
Viun3g02602 229 FunFam MYB-related transcription factor 12 65 - -
Viun3g02602 229 SMART sant 12 62 IPR001005 -
Viun3g02602 229 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02602 Viun-Chr3 26284992 26286333 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02602 2 194 MYB Transcription Factor Family AT2G16720 56.061 4.24e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun3g02602 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02602 K09422 - gmx:100814923 365.155