Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02586 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTCCCAACGGTGCTGCTGCTGCTGCTGCTGGAGGAAACCAGTTCGTGACGACGTCGCTTTACGTCGGAGATCTCGACCCCAACGTCACGGACTCACAGCTGTATGACCTGTTCAATCAATTGGGCCAAGTCGTGTCTGTTAGGGTTTGCAGGGACTTGACCAGCCGAAGATCGCTCGGTTACGGCTATGTCAACTATAGCAACCCTCAAGATGCTGCCAGAGCATTAGATGTTCTGAATTTCACTCCTCTCAACAACAAGCCCATCCGTATTATGTATTCGCATCGTGATCCCAGTATCCGGAAAAGTGGGGCAGGAAATATTTTTATCAAGAATTTGGATAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGGAATATCCTTTCATGCAAGGTAGCAACGGATTCATCTGGGCAATCAAAAGGATATGGCTTTGTTCAGTTTGATAATGAGGAATCTGCCCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTGTATGTGGGACCCTTCCTTCGCAAGCAAGAGAGAGAGAGTGCTATTGACAAGGCAAAATTCAATAATGTTTTTGTAAAGAATTTAGCAGATTCGACTAGTGATGATGAATTGAAGACAATTTTTGGTGAATTTGGAACTATTACTAGTGCTGTAGTGATGAGGGATGGAGATGGGAAATCAAAGTGCTTTGGGTTTGTGAATTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGAGGCTCTCAATGGCAAAAAATTTGAGGATAAGGAATGGTACGTTGGAAAAGCTCAGAAGAAATCTGAAAGGGAGAATGAGTTGAAACAACGATTTGAGCAGAGCATGAAAGAAGCTGCTGATAAATATCAAGGGGCAAACTTGTATGTCAAAAATTTGGATGATAGCATTAGTGATGATAAACTTAAGGAGCTGTTCTCCCCTTTTGGTACCATCACCTCTTGCAAGGTTATGAGGGACCCAAATGGCGTTAGTCGTGGATCAGGATTTGTTGCGTTCTCAACTCCTGAGGAGGCATCTAGAGCACTCGCTGAGATGAATGGCAAAATGGTGGTTAGTAAACCTCTCTATGTGACTCTAGCCCAAAGGAAAGAAGATAGAAGAGCTAGACTGCAGGCTCAGTTTGCTCAAATGCGACCTGTTGGAATGCCACCATCTGTTGGTCCTCGTGTGCCAATGTATCCTCCAGGTGCTCCAGGTATTGGTCAACAAATATTTTACGGCCAAGGCCCTCCTGCTATCATTCCTTCTCAGCCCGGATTTGGTTATCAACAACAACTTGTGCCTGGTATGAGGCCAGGTGCAGCTCCTGTGCCAAATTTCTTTGTACCAATGGTTCAGCAGGGACAACAGGGTCAGCGCCCTGGTGGAAGGCGTGCAGTCCAACAGTCCCAGCAGCCAGTTCCAATGATGCCACAGCAGATGCTTCCTAGGGGACGTGTCTATCGATATCCTCCTGGCAGGGGCATTCCTGATGTTCCTATGCCTGGGGTTGCTGGGGGTATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCAATTCGTGATGCATCACTCTCACAGCAAATTCCTATTGGGGCTTTGGCATCGGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAGCAGTTAGAGCCTGATAATGCTGCAAAAGTCACAGGCATGCTTCTTGAGATGGACCAGACTGAAGTTCTGCATTTGCTGGAGTCACCAGAAGCGCTGAAAGCAAAGGTGGCTGAGGCGATGGATGTCCTAAGGAATGTTGCCCAGCAGCAGCAGGCTGGCGGTGCTGCTGATCAGCTGGCTTCTTTATCACTTAATGACAACCTTGTTTCTTAA 1953 0.47 MAQVQVQPQNAMPGPNGAAAAAAGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKAKFNNVFVKNLADSTSDDELKTIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADDAARAVEALNGKKFEDKEWYVGKAQKKSERENELKQRFEQSMKEAADKYQGANLYVKNLDDSISDDKLKELFSPFGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQMRPVGMPPSVGPRVPMYPPGAPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAAPVPNFFVPMVQQGQQGQRPGGRRAVQQSQQPVPMMPQQMLPRGRVYRYPPGRGIPDVPMPGVAGGMFSVPYDVGGMPIRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02586 650 FunFam Polyadenylate-binding protein 296 401 - -
Viun3g02586 650 Gene3D - 547 630 - -
Viun3g02586 650 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Viun3g02586 650 FunFam Polyadenylate-binding protein 547 629 - -
Viun3g02586 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Viun3g02586 650 CDD RRM4_I_PABPs 312 390 - -
Viun3g02586 650 FunFam Polyadenylate-binding protein 120 193 - -
Viun3g02586 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Viun3g02586 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Viun3g02586 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 280 IPR000504 GO:0003723
Viun3g02586 650 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 189 IPR000504 GO:0003723
Viun3g02586 650 CDD RRM2_I_PABPs 117 193 IPR045305 -
Viun3g02586 650 Coils Coil 285 309 - -
Viun3g02586 650 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 32 624 IPR006515 GO:0003723
Viun3g02586 650 MobiDBLite consensus disorder prediction 475 495 - -
Viun3g02586 650 SMART poly_2 563 626 IPR002004 GO:0003723
Viun3g02586 650 Gene3D - 296 398 IPR012677 -
Viun3g02586 650 CDD RRM1_I_PABPs 32 111 IPR034364 -
Viun3g02586 650 CDD RRM3_I_PABPs 209 288 - -
Viun3g02586 650 FunFam Polyadenylate-binding protein 17 119 - -
Viun3g02586 650 Gene3D - 120 192 IPR012677 -
Viun3g02586 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 287 IPR000504 GO:0003723
Viun3g02586 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 191 IPR000504 GO:0003723
Viun3g02586 650 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Viun3g02586 650 Gene3D - 1 119 IPR012677 -
Viun3g02586 650 Gene3D - 195 295 IPR012677 -
Viun3g02586 650 PANTHER RNA BINDING PROTEIN 30 93 - -
Viun3g02586 650 SMART rrm2_1 211 283 IPR003954 GO:0003676
Viun3g02586 650 SMART rrm2_1 120 192 IPR003954 GO:0003676
Viun3g02586 650 SMART rrm2_1 314 386 IPR003954 GO:0003676
Viun3g02586 650 SMART rrm2_1 32 105 IPR003954 GO:0003676
Viun3g02586 650 SUPERFAMILY RNA-binding domain, RBD 207 299 IPR035979 GO:0003676
Viun3g02586 650 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Viun3g02586 650 SUPERFAMILY PABC (PABP) domain 492 644 IPR036053 GO:0003723
Viun3g02586 650 SUPERFAMILY RNA-binding domain, RBD 309 415 IPR035979 GO:0003676
Viun3g02586 650 FunFam Polyadenylate-binding protein 200 295 - -
Viun3g02586 650 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Viun3g02586 650 SMART rrm1_1 120 192 IPR000504 GO:0003723
Viun3g02586 650 SMART rrm1_1 314 386 IPR000504 GO:0003723
Viun3g02586 650 SMART rrm1_1 32 105 IPR000504 GO:0003723
Viun3g02586 650 SMART rrm1_1 211 283 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02586 Viun-Chr3 25838367 25843807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02586 30 649 Eukaryotic Initiation Factors Gene Family AT1G49760 74.882 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02586 K13126 - gmx:100780329 1169.07