Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02580 ATGTCACAGGGACAAGAGCTGGAGCAGGTGCAATGCTTCGGCCGCAAGAAGACGGCGGTGGCGGTTACCTACTGCAAACGAGGTCGCGGCCTTATCAAGATCAATGGTTGCCCCATCGAGCTCGTCGAACCGGAAATCCTCCGGTTCAAGGCTTTTGAGCCGATCCTCCTTCTCGGGAAGAGCCGGTTCGCGGGAGTGGATATGCGAATCCGCGTCAACGGTGGTGGTCACACCTCCCAGATTTACGCCATTCGTCAGAGCATTGCCAAAGCCCTGGTCGCCTTCTACCAGAAGTACGTGGACGAACAGAGCAAGAAGGAGATCAAGGACATCCTCGTTCGCTATGACCGCACGTTGCTCGTTGCGGACCCCAGGCGCTGCGAGCCTAAGAAGTTCGGTGGTCGCGGTGCTCGAGCCAGGTTCCAGAAGTCTTACCGTTGA 441 0.576 MSQGQELEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVNGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02580 146 ProSitePatterns Ribosomal protein S9 signature. 74 92 IPR020574 GO:0003735|GO:0005840|GO:0006412
Viun3g02580 146 FunFam 40S ribosomal protein S16 3 146 - -
Viun3g02580 146 Pfam Ribosomal protein S9/S16 14 146 IPR000754 GO:0003735|GO:0005840|GO:0006412
Viun3g02580 146 PANTHER RIBOSOMAL PROTEIN S9 5 143 IPR000754 GO:0003735|GO:0005840|GO:0006412
Viun3g02580 146 SUPERFAMILY Ribosomal protein S5 domain 2-like 9 146 IPR020568 -
Viun3g02580 146 Gene3D - 2 146 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02580 Viun-Chr3 25772489 25773196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02580 1 146 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 86.986 2.97e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02580 K02960 - gmx:100779794 279.256