Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02576 ATGCAAGGTCAAAGGAGGACTGTTGGATCGTTCCCAGCAATTATTAGTATGATGCAAGGGCCCAGTTCTAGTGGCACTGATACAAATCATCAGTCTTCCTTAAATCATGTGCAAAATGCTGTAGATTCCCGATTTTCAGATTATGGGGGATCTTTTGGTGAGACTGCATGTTTATGTAGTACTAGTCATGATGTTCAAAGCTTCAGTAGTTGGAATTTAGGGGAATCTAGTTCTAGACTGAATCTGACCAACCAAGGCAATGCAGAAGGTCTAAAATCAGAACATGGTTTATCTTCTTCATATAATGCTACTAGCGAGGATGGTCTTATATCTGAGGAAAGACAATTTGAACCAAATAGAGTAAATTTTCCTGTTAGCTCAAATAATAATCTACATGGCAATGAACCTAGAGTTTATCCTTCCTTTTGTCAAGGCTCTAGTTCTAATCATATTACCCAAAATATTAGTCTAGATATGGGGCATGTTGCTAATGCTTCTGACCGTGGGAAGGGAAAAGAAGCTAGTAGTGTTGATGACTATAATACTAGTGGAATAGATAGAGAAAAGACATTATTTTGCAGTACATCATGTAATTACACAGGAGCTTCATCTGAAAACTCTGGATCCATGGCTTGGGGTGACGGTGATAGTTCAAGTTCTCTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAAGCTCTTGAAGGTAGTTCTAGGCAACTGTGCTCAGGAGGAAGCTCAAGCACTTTTGCACAATCTGAAAATGATTATTGGCCTATTGGTCCTGCTGATCCTAGAGCTTCTAGCAACTTAAGTGATGTTACAACTTTGGAGGATATTCCTGTTACTAGTCCTCCATTACTGCAGAATGTAAGAAATGAAGTGAGACAAAAAGCTTCCAATGCATTTCCGTTGATAAGTATTGCAGAAAATCTAGAAAGGCCTGTAAGAAACCTCAATAGAAGAATGAGCCAACTACAGGATCAGGAATCTATACATGTCAATTTACCATCAATAGGGAGTTTTAGGCATCTTAATCATTCTTCTCTGAGTCAAATACCCGGCTCTCAGTCACTTAATGATTCATTGGAATTGAGGTTAACAGCCGGAGTAACAAATGCTAATTCTGGTACTTTAAACCAATCACCTGCCCAGCGTATCCATTCTTTTCCTTTGAGTAGAATCGCCAATCCTAGGGGGGGAAGATCTTTATCTTCTTATAACTCTGGAGATAGAGTTATTCGAGAAGATTTTAATTTGAGAGTGTTTCCCAGAGATAGTATTGAGCACCCTATGAATGCACCTGCATCTTCACAACATGAATCTACACGTTGGCATACACCTTCTGGTAATATGAACTTTTCTGAAGGTGTACCTCCTCCATCCTGGATTGGATCTAGTTCAAATGCCCACTTTTCACATAATTCTGGCTGGAATTTTAATCACGAAGTCCCAATTGAAAATGTGCAGAGTGTGTCAGAGTTTAATCTTTGGCCCCTTTTTCCTTCAGTTTGCTCTGCATCTGGTGTTCATAATGGTCATTCTACTCCATCTTCTTCTGGTCACCCCTCGTTTACCCAAGGTTCTGGCGACAATCAATCCTATCTAAGAACAACATTGTTAACAGAAAGAAGAGGTGGTGATGTTCTCCCTAGTCCCCATTCACTGCAAGCATTAACCTTTGACAATGAGGGGAGACGACGACTACTATCCGAGATTCGCCAGGTCTTGATGGCAATGCGGAGGGGTGAGAACTTACGAGCTGAGGATTATGCGTTATTTGACCCTTTCCTATATCATGGCTTGGCTGAAATACATGACAGACATAGAGAAATGCGCCTTGATGTTGACAACATGTCTTATGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGATGTTAGCACCGGATTGAGTGAGGATGTCATTGTTAAGTTGATGAAGCAACGACTCATGACACAGAGTTCTACAGTTTTGGAACCTTGTTCCATTTGTCAGGAGGAATTTGGTGATGGAGAGAATGTTGGATCAGTGGATTGTGGGCATGAGTTTCACAGTGCCTGCATCAAGCAGTGGCTAATGCAGAAGAACATCTGCCCCATTTGCAAAGTAACAGCCTTAGCTACATGA 2127 0.4095 MQGQRRTVGSFPAIISMMQGPSSSGTDTNHQSSLNHVQNAVDSRFSDYGGSFGETACLCSTSHDVQSFSSWNLGESSSRLNLTNQGNAEGLKSEHGLSSSYNATSEDGLISEERQFEPNRVNFPVSSNNNLHGNEPRVYPSFCQGSSSNHITQNISLDMGHVANASDRGKGKEASSVDDYNTSGIDREKTLFCSTSCNYTGASSENSGSMAWGDGDSSSSLVNWGSSCKRKALEGSSRQLCSGGSSSTFAQSENDYWPIGPADPRASSNLSDVTTLEDIPVTSPPLLQNVRNEVRQKASNAFPLISIAENLERPVRNLNRRMSQLQDQESIHVNLPSIGSFRHLNHSSLSQIPGSQSLNDSLELRLTAGVTNANSGTLNQSPAQRIHSFPLSRIANPRGGRSLSSYNSGDRVIREDFNLRVFPRDSIEHPMNAPASSQHESTRWHTPSGNMNFSEGVPPPSWIGSSSNAHFSHNSGWNFNHEVPIENVQSVSEFNLWPLFPSVCSASGVHNGHSTPSSSGHPSFTQGSGDNQSYLRTTLLTERRGGDVLPSPHSLQALTFDNEGRRRLLSEIRQVLMAMRRGENLRAEDYALFDPFLYHGLAEIHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIVKLMKQRLMTQSSTVLEPCSICQEEFGDGENVGSVDCGHEFHSACIKQWLMQKNICPICKVTALAT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02576 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 224 706 IPR045191 GO:0061630
Viun3g02576 708 MobiDBLite consensus disorder prediction 82 106 - -
Viun3g02576 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 706 IPR013083 -
Viun3g02576 708 Pfam Ring finger domain 661 702 IPR001841 -
Viun3g02576 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Viun3g02576 708 Coils Coil 308 328 - -
Viun3g02576 708 SMART ring_2 661 701 IPR001841 -
Viun3g02576 708 MobiDBLite consensus disorder prediction 237 254 - -
Viun3g02576 708 FunFam E3 ubiquitin-protein ligase MBR2 632 706 - -
Viun3g02576 708 MobiDBLite consensus disorder prediction 428 460 - -
Viun3g02576 708 MobiDBLite consensus disorder prediction 237 269 - -
Viun3g02576 708 SUPERFAMILY RING/U-box 660 704 - -
Viun3g02576 708 MobiDBLite consensus disorder prediction 431 460 - -
Viun3g02576 708 MobiDBLite consensus disorder prediction 508 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02576 Viun-Chr3 25710669 25719570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02576 18 708 C3H Transcription Factor Family AT2G15530 35.762 3.54e-98 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02576 - K19041 gmx:100809024 1100.89