Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02572 ATGCTCTTCATGTCAGAAGATCAAAGTTCTCATGATACGAACGTGCTCTGGGGAAACACGAATTCACAAAAGCAGAAGAACGAAAAGGACGAAGGTGTCATGAAAAAGAAGCGAAATCGAGAGCTGAACAAAGCTACCAGTGCAGAAGGAAATGCTGAAAATAATCGCGAATCTGATCATGAAATGCATATATGGACTGAGAGAGAAAGGAGAAAGAAAATGAAAACCATGTTCGCTAGTCTTCATGCATTGCTTCCGCATGTTCCTTCTAAGGCGGATAAATCAACGGTTGTGGATGAAGCAGTGAGCTACATCAAAAATCTCGAGAGAACCCTGGAAAAGCTTGAGAAGCAGAAAGAAGAAAGGGTCCGATGTGGGTCCACGTTTGGGTATGGGTCATCATCACCGTCGATGTTTATGACTGCTCAGGGACTTTCTTCTAATTACGGCTTTTCGAACGCGATTATGGGAACTTCTTCAAACGCGCTTTTACTCCCTGCGCAGCAGCAGCCAGTAGCTTTTGATAAAACCTGGGCCTCTTCAAACATGGTCTTGAATGTTTGTGGAGACGAGGCCCAATTCTGCATTTGCGCGGCCCATAAACCGGGTCTGGTGTCCAGCATAGTTTTTGTGCTTGATAAATACAAGATCGAGCTTGTGTATGCCCACATTTCGTGCATGGGGAATGGAAATGCAATCATGATTCAAGCTCATGGAAAACGAGCTTCACATCAGTTCCTGGATGCAAATTCAGTGGAAGAAATTTACAGGCAAGCTGCGGGAGAGATTCTGCTATGGATCGCTTAA 807 0.4461 MLFMSEDQSSHDTNVLWGNTNSQKQKNEKDEGVMKKKRNRELNKATSAEGNAENNRESDHEMHIWTERERRKKMKTMFASLHALLPHVPSKADKSTVVDEAVSYIKNLERTLEKLEKQKEERVRCGSTFGYGSSSPSMFMTAQGLSSNYGFSNAIMGTSSNALLLPAQQQPVAFDKTWASSNMVLNVCGDEAQFCICAAHKPGLVSSIVFVLDKYKIELVYAHISCMGNGNAIMIQAHGKRASHQFLDANSVEEIYRQAAGEILLWIA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02572 268 Gene3D - 49 124 IPR036638 GO:0046983
Viun3g02572 268 Coils Coil 98 125 - -
Viun3g02572 268 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 21 267 IPR044278 GO:0003700|GO:0006355|GO:0009960
Viun3g02572 268 CDD bHLH_AtbHLH_like 63 116 IPR045239 -
Viun3g02572 268 MobiDBLite consensus disorder prediction 1 61 - -
Viun3g02572 268 MobiDBLite consensus disorder prediction 1 23 - -
Viun3g02572 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 121 IPR036638 GO:0046983
Viun3g02572 268 Pfam Helix-loop-helix DNA-binding domain 63 109 IPR011598 GO:0046983
Viun3g02572 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 108 IPR011598 GO:0046983
Viun3g02572 268 SMART finulus 66 114 IPR011598 GO:0046983
Viun3g02572 268 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02572 Viun-Chr3 25696088 25697248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02572 51 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 38.710 2.20e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g02572 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02572 - - pvu:PHAVU_003G048000g 391.734