Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02571 ATGGATTTCTTATTGGAAAATCATACAGACACTTCTTCTAGTTCTAATCGTTCCAGTGAAATTAAAACAAACCAAAACCTTGTTGTGAATACGATGTCAAATGAAGATGTTGTTGATGAAAATGAGAAGAAAATTATTACTAGTGGTGAAGAGTCCTACGATCCGGGAACTAATACTGAACTGCATCTATCCATCGAAAGAGGCCGAAGAAAGAAAATGAAAGAAATGTTCGACGATCTTAGTGCTTTACTTCCCCAACTTCCTTCAAAGGCTGATAAAGCAACCATAGTGAACGAAGCAGTGAACTACATAAAAGTTCTGCAGGAAACCCTAGAAAAGCTAGAGAGAAAGAAAGAAGAAAGGGCAGAAGATGGTCTGAAACAAATAATGGGAAAGAGTTGTTGTGCAGTTTCAGTGTCTGAGAAGCAGAAAGTAGGTTTTGATAAAACTTGGGCAGCTTCAAACATGGTTCTGAACATTCGTGGAAATGAAGCTCAATTCTCGATTTGCTCGGTTCATAAGCCAGGACTCATGACCAACATTGTTTCTGTGCTGGAAAAGCACAACATAGAACTCATTTCTGCTACCATTTCGACCAATGGAAATGGAGGAACATGCATGATTCAAGTCCATGGAAAACAAGCTTCGGCTGCAAATTCAATGGAGGAAACTTACAGGAAAGCTGCTGAAGAAATTATGCCATGGATCTCTTAA 714 0.3894 MDFLLENHTDTSSSSNRSSEIKTNQNLVVNTMSNEDVVDENEKKIITSGEESYDPGTNTELHLSIERGRRKKMKEMFDDLSALLPQLPSKADKATIVNEAVNYIKVLQETLEKLERKKEERAEDGLKQIMGKSCCAVSVSEKQKVGFDKTWAASNMVLNIRGNEAQFSICSVHKPGLMTNIVSVLEKHNIELISATISTNGNGGTCMIQVHGKQASAANSMEETYRKAAEEIMPWIS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02571 237 CDD bHLH_AtbHLH_like 62 115 IPR045239 -
Viun3g02571 237 Gene3D - 53 123 IPR036638 GO:0046983
Viun3g02571 237 SMART finulus 63 113 IPR011598 GO:0046983
Viun3g02571 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 57 107 IPR011598 GO:0046983
Viun3g02571 237 Pfam Helix-loop-helix DNA-binding domain 62 108 IPR011598 GO:0046983
Viun3g02571 237 SUPERFAMILY ACT-like 165 224 IPR045865 -
Viun3g02571 237 Coils Coil 97 124 - -
Viun3g02571 237 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 34 236 IPR044278 GO:0003700|GO:0006355|GO:0009960
Viun3g02571 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 120 IPR036638 GO:0046983
Viun3g02571 237 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02571 Viun-Chr3 25679697 25683517 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02571 145 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 45.455 3.48e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun3g02571 HLH 1.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02571 - - vum:124823917 348.591