Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02570 ATGCCTGGAAGTTTAGAACCCTTGGATTTGGAGGTTCACATACCCTACCACTTCAGATGCCCAATCTCGCTGGAACTCATGAGAGACCCAGTCACCGTCTGCACCGGTCAGACCTACGACCGACCCAGCATCGAGTCCTGGGTTACCGCCGGTAACACAACCTGTCCCGTCACACGTGCCACTCTCACCGACTTCACCCTAATCCCCAACCACACCCTCCGCCGCCTAATCCAGGACTGGTGCGTTGCTAACCGCGCTTTCGGTGTCGAGCGAATCCCCACTCCCAAACAGCCCGCAGACCCGGCCCTGGTTCGCTCCCTTCTCAACCAAACATCCTCCGAATCCGCTCCAACTCACCTTCGTCTCTCCTCTCTCCGACGACTCAGACAACTTGCGCGCGACTCCGACAAGAACCGCTCCCTCATTTCCTCTCACAACGTCCGCCAGATCCTTCTCCCTATCATTTTCAGCGGTGCGGACGAGTTGAAGCACGAGTCGCTCGCCCTACTCGTTTTGTTCCCGCTCGCCGAGTCCGATTGCGCCGCTCTCGCATCCGACTCCGACAAGGTTAGTTATCTCTCGCGGTTGCTCTCGCACAGCTCGCTTGAAGTCCGAGTCAACTCGGCCGCGTTGATTGAGATCGTCGTCGCCGGGACGCACTCGCCGGAGCTCCGTGCACAGGTGAGCGATGTTGACGAAATCTATGACGGAGTCGTGGACCTGCTCCGCAGCCCGATCTCGTACCCGCGCGCGCTCAAGATCGGGATCAAGGCTTTGTTCGCGCTGTGCTTGGTGAAGCAGACACGGCACAAGGCGGTGGCCGCTGGTGCACCAGCGGTTCTCGTTGATAGGCTCGCGGACTTCGAGAAATGCGACGCGGAGAGGGCGCTCGCCACGGTGGAGCTCCTCTGCAGGATTCCCACGGGATGTGCCGCGTTCGCTAGCCATGCACTGACGGTGCCGATGCTGGTGAAGATAATACTGAAGATATCGGACCGCGCGACGGAGTACGCAGCCGGAGCGTTGCTGTCGTTGTGCTCCGAATCGGAGCGGTGCCAGAGAGAGGCGGTGACGGCGGGGGTGTTGACCCAGCTTCTACTTCTGGTGCAGAGCGATTGCACGGAGAGAGCTAAGAGGAAGGCCCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAGGATTGCATCGGAAATTCTGACGATTTTGCATGCAGCCAGGTTGTTGTGGTTCCCTTCTGA 1242 0.5934 MPGSLEPLDLEVHIPYHFRCPISLELMRDPVTVCTGQTYDRPSIESWVTAGNTTCPVTRATLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPADPALVRSLLNQTSSESAPTHLRLSSLRRLRQLARDSDKNRSLISSHNVRQILLPIIFSGADELKHESLALLVLFPLAESDCAALASDSDKVSYLSRLLSHSSLEVRVNSAALIEIVVAGTHSPELRAQVSDVDEIYDGVVDLLRSPISYPRALKIGIKALFALCLVKQTRHKAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPTGCAAFASHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQREAVTAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDCIGNSDDFACSQVVVVPF 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02570 413 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Viun3g02570 413 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Viun3g02570 413 SUPERFAMILY RING/U-box 11 90 - -
Viun3g02570 413 Gene3D - 93 260 IPR011989 -
Viun3g02570 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Viun3g02570 413 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Viun3g02570 413 PANTHER WDSAM1 PROTEIN 11 397 IPR045185 GO:0061630
Viun3g02570 413 CDD RING-Ubox_PUB 15 67 IPR045210 -
Viun3g02570 413 SUPERFAMILY ARM repeat 103 389 IPR016024 -
Viun3g02570 413 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Viun3g02570 413 Gene3D - 261 388 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02570 Viun-Chr3 25654765 25656922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02570 1 413 U-box Gene Family AT1G49780 66.509 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02570 - - var:108341190 757.673