Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02559 ATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAATTGCAAAGCACCACTGGGAGAGGAAAGTAAATGTAAGAAGTGTTTAAATGCGGGCATTGGTTATCTGCATCATATCGGAATTGAAGATAATATAACACTAAGTACATGTCGTGATGCCACTTTTGCTGCATTAGCGAGCCAAGTTGATGAGATATCTACTATTGACATTGCAATTTGTTTCTTTGGGGTTCAAGGACTTCTCAGGCTTCCTGTTCTAGAGTCAACACCATCCTTGCCTGCTCCTAAGGCTTCTCCAAGCCCACCTGTTTCTGATGGCCCGAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAAGCACCATTCATATCGTTTGACGTTAGTTCCAGGTATTGCTATTGCAGTTACAGCTGTTGCTGTTATCACACTCATAGTCTTGATAGTTCTAATTCGCCAGAAAAGCAGAGAGCTAGACAAGTCTGATAATTTTGGTAAACCCTGTTCGAAAACCTTACCTCCTTGTACAACATGGAAATTTCAGGAAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAGGGCTACAGAGGATTTTAGCACTGTCATTGGTCAAGGGGGATTTGGAACTGTGTATAAAGCTGATTTTTCTGATGGCCTGGTCGCAGCAGTTAAACGGATGAATAGAATCTCTGAGCAGGGAGAGGATGAGTTTTGCAGAGAAATTGAGCTTCTTGCCCGGCTGCACCATCGGCATCTTGTTGCCTTGAGAGGCTTTTGCATTCAAAAACGTGAGAGGTTTCTATTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACAAGAATCCAAATTGCCATTGATGTTGCCAATGCCCTGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGCCTTGCACAAGCTTCAAAAGATGGCTCAGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGACCCTGAATATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTGTTACTACTTGAAATTGTAACAGGAAGACGAGCCATTCAAGATAATAAGAATCTAGTTGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATCTCTATAGTAGCATGGTGTACCCATAGAGAGGGAAGAGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCATAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTAACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCAAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 1644 0.4234 MLQSPRFTEVTKNCKAPLGEESKCKKCLNAGIGYLHHIGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLRLPVLESTPSLPAPKASPSPPVSDGPSQPLLSAPLKGKHHSYRLTLVPGIAIAVTAVAVITLIVLIVLIRQKSRELDKSDNFGKPCSKTLPPCTTWKFQEGSSSMFRKFSYKEIKRATEDFSTVIGQGGFGTVYKADFSDGLVAAVKRMNRISEQGEDEFCREIELLARLHHRHLVALRGFCIQKRERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQAVEDEECQGSQHRGRRSKGKMLRNEALFNSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02559 547 Gene3D Phosphorylase Kinase; domain 1 173 274 - -
Viun3g02559 547 Gene3D Transferase(Phosphotransferase) domain 1 275 492 - -
Viun3g02559 547 ProSitePatterns Protein kinases ATP-binding region signature. 205 227 IPR017441 GO:0005524
Viun3g02559 547 MobiDBLite consensus disorder prediction 90 110 - -
Viun3g02559 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 319 331 IPR008271 GO:0004672|GO:0006468
Viun3g02559 547 ProSiteProfiles Protein kinase domain profile. 199 478 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02559 547 CDD STKc_IRAK 205 467 - -
Viun3g02559 547 PANTHER OS01G0750732 PROTEIN 44 487 - -
Viun3g02559 547 FunFam Putative receptor-like protein kinase 167 274 - -
Viun3g02559 547 Pfam Protein kinase domain 203 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02559 547 FunFam Putative receptor-like protein kinase 275 475 - -
Viun3g02559 547 MobiDBLite consensus disorder prediction 93 107 - -
Viun3g02559 547 SUPERFAMILY Protein kinase-like (PK-like) 179 470 IPR011009 -
Viun3g02559 547 SMART serkin_6 199 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02559 Viun-Chr3 25267135 25273581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02559 1 546 Receptor kinase-like Gene Family AT3G19300 60.545 0.0 633
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Viun3g02559 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02559 - - gmx:100807955 986.097