Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02557 ATGAAAATAGTAATCAAATTTAGCCTCATAAATGCAACACCACCATCACTCAAGTCTTCCTCCTTCACATTTGTCTCAACTCCTTATCACTGTTTCAACAGAGATTGCCCTTTGAATTTTACTGGTTCAAACTTCACACTTGCATCCTCTCTATGCTCTAACCAGGGTGACAGAGGAAAATGCTGCCGGTACATCAATACTAATGTTGCAATTGCCGTTTCTCGTTTTGCTAATTCAACAGGCAACCTAGGGGTCTCTCAAAATGCGACTGATATCTGCCTCCAAACCATATTTCAAACCTTGCAACTTTATGGAGTTGCCCAAAATGCAACAGCTTTCTGTGGTTTCGGAACAAAAATTCCTGTTAATTATGAATGCAAGGGGAGAACTAGTGTTGTCCAAATGCTGCAATCCCCCAGATTTACGGAGGTCACAAAAAATTGCAAAGCACCACTGGGAGAGGAAAGTAAATGTAAGAAGTGTTTAAATGCGGGCATTGGTTATCTGCATCATATCGGAATTGAAGATAATATAACACTAAGTACATGTCGTGATGCCACTTTTGCTGCATTAGCGAGCCAAGTTGATGAGATATCTACTATTGACATTGCAATTTGTTTCTTTGGGGTTCAAGGACTTCTCAGGCTTCCTGTTCTAGAGTCAACACCATCCTTGCCTGCTCCTAAGGCTTCTCCAAGCCCACCTGTTTCTGATGGCCCGAGTCAACCATTGTTAAGTGCACCTTTAAAGGGAAAGCACCATTCATATCGTTTGACGTTAGTTCCAGGTTCTTCATCTATGTTCCGAAAATTCAGCTACAAGGAGATAAAAAGGGCTACAGAGGATTTTAGCACTGTCATTGGTCAAGGGGGATTTGGAACTGTGTATAAAGCTGATTTTTCTGATGGCCTGGTCGCAGCAGTTAAACGGATGAATAGAATCTCTGAGCAGGGAGAGGATGAGTTTTGCAGAGAAATTGAGCTTCTTGCCCGGCTGCACCATCGGCATCTTGTTGCCTTGAGAGGCTTTTGCATTCAAAAACGTGAGAGGTTTCTATTGTATGAGTACATGGGAAATGGAAGCTTGAAAGATCATCTTCATTCCCCTGGTAAAACACCTTTAAGTTGGCGAACAAGAATCCAAATTGCCATTGATGTTGCCAATGCCCTGGAGTACCTCCATTTCTATTGCGATCCTCCTCTGTGTCACAGAGATATTAAATCTAGCAACACTTTACTGGATGAGAACTTTGTTGCCAAGATAGCTGATTTTGGCCTTGCACAAGCTTCAAAAGATGGCTCAGTATGCTTTGAACCTGTAAACACTGAAATTCGGGGAACTCCGGGTTATATGGACCCTGAATATGTTGTTACTCAAGAGCTCACCGAGAAAAGTGACATATACAGTTTTGGGGTGTTACTACTTGAAATTGTAACAGGAAGACGAGCCATTCAAGATAATAAGAATCTAGTTGAATGGGCCCAACCATACATGGAATCAGATACGAGATTATTGGAGCTAGTAGATCCCAATGTGAGGGAGTCTTTTGACTTGGATCAGCTCCAAACAGTAATCTCTATAGTAGCATGGTGTACCCATAGAGAGGGAAGAGCAAGGCCTTCAATAAAACAGGTACTTAGGCTTCTGTATGAGACATCAGAACCAATGCACAGTGAGTTTCTACAAGCTGTTGAAGATGAAGAATGTCAGGGAAGTCAGCATAGAGGCAGAAGAAGCAAGGGGAAAATGCTCAGAAATGAAGCATTGTTTAACAGCGGAGAGGGAAGATATCTTGCTTCATCTTCAAGTACATCCCGGTCATATTGCAGTAGAAGTTTTTTACTTGAGACTGGCTCTCCACAGTCTCCGCCAAATATGTTCTCTGTGTGA 1890 0.4217 MKIVIKFSLINATPPSLKSSSFTFVSTPYHCFNRDCPLNFTGSNFTLASSLCSNQGDRGKCCRYINTNVAIAVSRFANSTGNLGVSQNATDICLQTIFQTLQLYGVAQNATAFCGFGTKIPVNYECKGRTSVVQMLQSPRFTEVTKNCKAPLGEESKCKKCLNAGIGYLHHIGIEDNITLSTCRDATFAALASQVDEISTIDIAICFFGVQGLLRLPVLESTPSLPAPKASPSPPVSDGPSQPLLSAPLKGKHHSYRLTLVPGSSSMFRKFSYKEIKRATEDFSTVIGQGGFGTVYKADFSDGLVAAVKRMNRISEQGEDEFCREIELLARLHHRHLVALRGFCIQKRERFLLYEYMGNGSLKDHLHSPGKTPLSWRTRIQIAIDVANALEYLHFYCDPPLCHRDIKSSNTLLDENFVAKIADFGLAQASKDGSVCFEPVNTEIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRAIQDNKNLVEWAQPYMESDTRLLELVDPNVRESFDLDQLQTVISIVAWCTHREGRARPSIKQVLRLLYETSEPMHSEFLQAVEDEECQGSQHRGRRSKGKMLRNEALFNSGEGRYLASSSSTSRSYCSRSFLLETGSPQSPPNMFSV 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02557 629 Gene3D Transferase(Phosphotransferase) domain 1 357 574 - -
Viun3g02557 629 Pfam Protein kinase domain 285 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02557 629 MobiDBLite consensus disorder prediction 224 244 - -
Viun3g02557 629 SUPERFAMILY Protein kinase-like (PK-like) 259 552 IPR011009 -
Viun3g02557 629 Gene3D Phosphorylase Kinase; domain 1 248 356 - -
Viun3g02557 629 CDD STKc_IRAK 287 549 - -
Viun3g02557 629 SMART serkin_6 281 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02557 629 ProSiteProfiles Protein kinase domain profile. 281 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun3g02557 629 FunFam Putative receptor-like protein kinase 357 557 - -
Viun3g02557 629 MobiDBLite consensus disorder prediction 227 241 - -
Viun3g02557 629 Pfam SPARK 34 172 IPR043891 -
Viun3g02557 629 ProSitePatterns Protein kinases ATP-binding region signature. 287 309 IPR017441 GO:0005524
Viun3g02557 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
Viun3g02557 629 FunFam Putative receptor-like protein kinase 251 356 - -
Viun3g02557 629 PANTHER OS01G0750732 PROTEIN 156 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02557 Viun-Chr3 25267135 25273718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02557 36 628 Receptor kinase-like Gene Family AT3G19300 56.857 0.0 722
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Viun3g02557 Pkinase 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02557 - - gmx:100807955 1073.92