Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02555 ATGGCTACCCCTAATAAATCAACACCAATAACATCTTCTGACACTTTTGAACAGAAGGGGAAGACTATGACTGAGTCAAATGCAGCCATTCTTCAGTGTCCTTTAAAACAGCAACTTCATAGCTCCTTAGATGGCCCAGTAGCAATCCTTTGGGATATTGAGAATTGTCCTGTTCCAAGTGATGTACGGCCTGAAGATGTAGCAGGTAATATAAGAATGGCTTTACGGGTGCACCCAGTAATTAAAGGAGCTGTTATGCTGTTTTCTGCTTATGGGGATTTCAATTCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGCGTTAAACTTATTGATGTTCCAAATGGGAGAAAAGATGCTGCTGATAAAGCTATCTTGGTCGATATGTTCTTATTTGCTCTTGACAACCCTCCACCATCCTCTATTATGCTTATATCTGGAGATGTTGATTTTGCACCAGCACTTCACATCCTTGGTCAGCGAGGATATACTGTTATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCATCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGTGTGGCACGGGGGGAAGGCTTTGTGCCTCCCTCAAAGGCTTTAGTGCCACCCCGAGGAGGTCCAATTGAGCTTGCTGGATATTTGATGGGGTGCCATATCAATGACAATTCTGAAGGATTAAATGAAGAAGAAGCAATAGTTTATAGAGGTATGTCACAGAACTATTACAACTCAAGGGAATTTTCATTGGTGTCACAATCACTGTCTGAATACAACTGTGGCACATCGAACATGACTTGCTTGCCGACCACTATGAGATCACACAGCCTTCCATCTGTATTTAATGATGTTCAAGGAGGGTCTATGATGCCTTCTGGTGATCATAATGAATGCCAGTTGTGGGTACAACCTGGTGATTTAAATGGTCTCAAGGGGCAGCTGGTAAGGTTGCTTGAACATTTTGGAGGATGCCTGCCCCTGGCCCGAGTCCCAGCAGAGTACCAGAAAATCTATGGGAGACCTCTTTATGTTGCTGAATATGGGGCAATAAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATGCCTTGGCTGTGGAAGGGAAAGGGACTCGGAAATTTGTGTATCTCAGAAACTGGAAGGCAGGCCCAAGTGCTCCCCCTCTCTCTCTGGCAAAGAAAGATAAGAAAGGAAAGGGAACCCAGGAAGAGAATGTGAATGTTGTCAATGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATAGAAGAACATGATGAAAGAAGTTGCATAGGCAAGGCCAATCAGGAGAGTGCAGCCAAAAGTGAAGTGGATGACTGTGTTATTGACCACTTCAAGTATGAGCTGCAAGAGATTCTAGTAAGCTATTCTTGTCGAATATTCCTTGGTTGTTTTGAGGCTATATACCAGCAGCGATACAAGAAACAGCTGGAATATCAGAGATTTGGTGTGAATAAGTTGGAGGATTTGTTTGAGAAAGTGAGTGATGTGGTGGTATTGCATGAGGAACCAGTAAGCAAGAAGAAGTTCCTGGCTGCTGTGGGTGGTTAG 1599 0.4409 MATPNKSTPITSSDTFEQKGKTMTESNAAILQCPLKQQLHSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMLFSAYGDFNSFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVARGEGFVPPSKALVPPRGGPIELAGYLMGCHINDNSEGLNEEEAIVYRGMSQNYYNSREFSLVSQSLSEYNCGTSNMTCLPTTMRSHSLPSVFNDVQGGSMMPSGDHNECQLWVQPGDLNGLKGQLVRLLEHFGGCLPLARVPAEYQKIYGRPLYVAEYGAIKLVNLFKKMGDALAVEGKGTRKFVYLRNWKAGPSAPPLSLAKKDKKGKGTQEENVNVVNGGCSSDEFSDEERVVIEEHDERSCIGKANQESAAKSEVDDCVIDHFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYQRFGVNKLEDLFEKVSDVVVLHEEPVSKKKFLAAVGG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02555 532 CDD PIN_limkain_b1_N_like 46 172 - -
Viun3g02555 532 CDD LOTUS 458 520 - -
Viun3g02555 532 CDD LOTUS 313 382 - -
Viun3g02555 532 ProSiteProfiles OST-type HTH domain profile. 312 384 IPR025605 -
Viun3g02555 532 Pfam NYN domain 46 186 IPR021139 GO:0004540
Viun3g02555 532 PANTHER LIMKAIN B LKAP 28 496 IPR024768 GO:0005777|GO:0010468
Viun3g02555 532 Gene3D - 312 381 IPR041966 -
Viun3g02555 532 Gene3D - 454 525 IPR041966 -
Viun3g02555 532 Gene3D - 43 192 - -
Viun3g02555 532 ProSiteProfiles OST-type HTH domain profile. 457 531 IPR025605 -
Viun3g02555 532 Pfam OST-HTH/LOTUS domain 460 520 IPR025605 -
Viun3g02555 532 Pfam OST-HTH/LOTUS domain 314 379 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02555 Viun-Chr3 25263493 25266759 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02555 43 197 C2H2 Transcription Factor Family AT5G61190 41.935 3.28e-28 117