Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02533 ATGATGTCGTCCTCCTCCTCCTCCTTCTCCCGCGCCACTCTCACCCCCGAGCAAGAACTCTCCGTCATGGTCGCCGCTCTCACCAACGTCGTCTCCGGCTCCACCTCCTCCGACGCCGTCTCCCTCCCGGACTTCCGCCTCCCCAACGCCTCCCAGCCTCTCGCCGGAAACACCTTCGCGCCGCCCACTATGGACACGTGTCGCGAGTGCAATATCGCTGGCTGCTTGGGCTGCAACTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGCCAAGAAGAAGTACAGAGGCGTGAGGCAGAGGCCATGGGGTAAGTGGGCGGCCGAGATCCGCGACCCTCGCCGTGCGGCCCGTGTCTGGCTCGGGACTTTCAACACGGCCGAGGATGCCGCCCGGGCCTACGACAAGGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCTTAGTGGACGAGTCCTTAAGCATGCAGCAGAGCGAGCCGCAGAGGGTTGCAGCGGAAGAACAAATAAAGAACGAGAATCTCAACCAGGGCATGGAAATGGAGACGCTGGAATTCGGGAACAAAGATACCGAATTCTGGGACAGGATTGGCGAAGCTGATTTTCATCAGCTCATGATGATGATGGATTTCACCGGAGATTCTTCCGACTCCGCCACTGGGAACACTCTTAGTTCCTGA 690 0.5942 MMSSSSSSFSRATLTPEQELSVMVAALTNVVSGSTSSDAVSLPDFRLPNASQPLAGNTFAPPTMDTCRECNIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEDAARAYDKAAIEFRGPRAKLNFPLVDESLSMQQSEPQRVAAEEQIKNENLNQGMEMETLEFGNKDTEFWDRIGEADFHQLMMMMDFTGDSSDSATGNTLSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02533 229 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Viun3g02533 229 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Viun3g02533 229 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Viun3g02533 229 CDD AP2 95 151 IPR001471 GO:0003700|GO:0006355
Viun3g02533 229 FunFam Ethylene-responsive transcription factor 2 93 152 - -
Viun3g02533 229 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Viun3g02533 229 Gene3D AP2/ERF domain 93 153 IPR036955 GO:0003700|GO:0006355
Viun3g02533 229 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Viun3g02533 229 PANTHER DNA-BINDING DOMAIN 53 171 IPR044808 GO:0003700|GO:0009873
Viun3g02533 229 Pfam AP2 domain 94 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02533 Viun-Chr3 24732921 24733901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02533 9 159 AP2-EREBP Transcription Factor Family AT4G34410 47.619 6.51e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun3g02533 AP2 2.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02533 - - gmx:100820426 356.295