Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02496 ATGGGTTCGGTTCCGCCAGAACTGAGCTTGGATTTAAGACCCTCCTTTGTCCCCAAAACCATCACAGATTTCCTCCGCCACCTCTCTTCCGCCACCGACAGGCTCGCCACTCTTCACGATTTCCTCGCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTATCTCCATGCTTCTCTTAAACGACGCAATTTCACTCCTCAAGACGGAATCGCAGAAATGCCGGCCGCGTGATTGTCCACCGGTCTTGGAGGAGTTTATCCCTTTGAAGAAAGAACGTGATCAGAATGAAGGAAATAACTATAATCATAATGACATGGATAACGAATGCAGAGATAAGAAGAATTGGTTGAGTTCGGTTCAGCTTTGGAATAACAGTACTACTAATAACAATGCATCTGATCGGAAACAACACCACCAACAACAACTTCATAAATTAGAAAATAAGAAAATTGAAGAGGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGCAGCAATAGAAATGGAGGAAGAAGGGCTTTTATGCCTTTCTCCAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTGGCAACAGCGGGACTGGGTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTCTCTTCAGACCCCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAACAGGGCTGTTTCTTCTTCTCCTCCTACGGTGCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCCAGGAAACAGAGGAGATGCTGGTCCCCTGAATTGCACAGACGATTTGTTAATGCTTTGCAGAAACTAGGAGGTTCTCAAGCAGCAACACCAAAGCAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACGAACGATGAAGTGAAAAGCCACTTACAAAAATACAGACTTCATACGCGGAGAGTTCCAGCAGGAAGTGGTAATCAGCCAGTTGTAGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTGCAGGGTCTCGAGGAGGAACGTCCCCAACGGAAGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCACAAACCTGGAAAAGTTGATGTATAG 1218 0.4704 MGSVPPELSLDLRPSFVPKTITDFLRHLSSATDRLATLHDFLARLEDELRKIHAFKRELPISMLLLNDAISLLKTESQKCRPRDCPPVLEEFIPLKKERDQNEGNNYNHNDMDNECRDKKNWLSSVQLWNNSTTNNNASDRKQHHQQQLHKLENKKIEEGQSVGEDPFQSCSNRNGGRRAFMPFSRYSSSSSSVPVATAGLGAATKEEKEESVMNRLSLQTPSVKEGCGSRGSRSSSNRAVSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAGSGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLTAGSRGGTSPTEGDSMEDDEDARSESYSWKSHMHKPGKVDV 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02496 405 SUPERFAMILY Homeodomain-like 260 321 IPR009057 -
Viun3g02496 405 MobiDBLite consensus disorder prediction 344 405 - -
Viun3g02496 405 Gene3D - 262 320 - -
Viun3g02496 405 MobiDBLite consensus disorder prediction 157 176 - -
Viun3g02496 405 NCBIfam myb-like DNA-binding domain, SHAQKYF class 263 318 IPR006447 GO:0003677
Viun3g02496 405 MobiDBLite consensus disorder prediction 344 375 - -
Viun3g02496 405 MobiDBLite consensus disorder prediction 215 265 - -
Viun3g02496 405 FunFam Myb family transcription factor 262 320 - -
Viun3g02496 405 Pfam Myb-like DNA-binding domain 265 316 IPR001005 -
Viun3g02496 405 Coils Coil 135 155 - -
Viun3g02496 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 320 IPR017930 -
Viun3g02496 405 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 395 IPR044787 GO:0003700|GO:0006355
Viun3g02496 405 MobiDBLite consensus disorder prediction 386 405 - -
Viun3g02496 405 MobiDBLite consensus disorder prediction 203 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02496 Viun-Chr3 23884759 23887561 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02496 7 339 G2-like Transcription Factor Family AT2G03500 40.805 2.59e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun3g02496 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02496 - - gmx:100812420 633.639