Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g02495 ATGGGTTCGGTTCCGCCAGAACTGAGCTTGGATTTAAGACCCTCCTTTGTCCCCAAAACCATCACAGATTTCCTCCGCCACCTCTCTTCCGCCACCGACAGGCTCGCCACTCTTCACGATTTCCTCGCTCGCTTGGAAGACGAGCTCCGCAAGATCCACGCCTTCAAGCGCGAGCTTCCTATCTCCATGCTTCTCTTAAACGACGCAATTTCACTCCTCAAGACGGAATCGCAGAAATGCCGGCCGCGTGATTGTCCACCGGTCTTGGAGGAGTTTATCCCTTTGAAGAAAGAACGTGATCAGAATGAAGGAAATAACTATAATCATAATGACATGGATAACGAATGCAGAGATAAGAAGAATTGGTTGAGTTCGGTTCAGCTTTGGAATAACAGTACTACTAATAACAATGCATCTGATCGGAAACAACACCACCAACAACAACTTCATAAATTAGAAAATAAGAAAATTGAAGAGGGGCAATCTGTTGGTGAGGATCCTTTTCAGTCGTGCAGCAATAGAAATGGAGGAAGAAGGGCTTTTATGCCTTTCTCCAGGTACTCTTCTTCTTCATCTTCTGTGCCGGTGGCAACAGCGGGACTGGGTGCTGCAACCAAAGAAGAGAAGGAAGAGAGTGTTATGAATAGGCTTTCTCTTCAGACCCCTTCTGTGAAAGAGGGGTGTGGTTCAAGGGGATCCAGAAGCAGTTCCAACAGGGCTGTTTCTTCTTCTCCTCCTACGGTGCACCCCAGTTTGAGGGCATCATCGCTTCAGCAGACTGCCAGGAAACAGAGGAGATGCTGGTCCCCTGAATTGCACAGACGATTTGTTAATGCTTTGCAGAAACTAGGAGGTTCTCAAGCAACACCAAAGCAAATTAGAGAGCTGATGCAGGTTGATGGCCTGACGAACGATGAAGTGAAAAGCCACTTACAAAAATACAGACTTCATACGCGGAGAGTTCCAGCAGGAAGTGGTAATCAGCCAGTTGTAGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAACGACTCCTCAAAAGTTAGCAGTTCAGGGTCAGGTTCTCCTCAAAGTCCCCTTCATTTGACTGCAGGGTCTCGAGGAGGAACGTCCCCAACGGAAGGTGACAGCATGGAAGATGATGAAGATGCAAGATCCGAGAGTTATAGTTGGAAAAGTCATATGCACAAACCTGGAAAAGTTGATGTATAG 1215 0.47 MGSVPPELSLDLRPSFVPKTITDFLRHLSSATDRLATLHDFLARLEDELRKIHAFKRELPISMLLLNDAISLLKTESQKCRPRDCPPVLEEFIPLKKERDQNEGNNYNHNDMDNECRDKKNWLSSVQLWNNSTTNNNASDRKQHHQQQLHKLENKKIEEGQSVGEDPFQSCSNRNGGRRAFMPFSRYSSSSSSVPVATAGLGAATKEEKEESVMNRLSLQTPSVKEGCGSRGSRSSSNRAVSSSPPTVHPSLRASSLQQTARKQRRCWSPELHRRFVNALQKLGGSQATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAGSGNQPVVVLGGLWMSQDQYNDSSKVSSSGSGSPQSPLHLTAGSRGGTSPTEGDSMEDDEDARSESYSWKSHMHKPGKVDV 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g02495 404 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 13 394 IPR044787 GO:0003700|GO:0006355
Viun3g02495 404 MobiDBLite consensus disorder prediction 343 374 - -
Viun3g02495 404 MobiDBLite consensus disorder prediction 157 176 - -
Viun3g02495 404 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 319 IPR017930 -
Viun3g02495 404 Pfam Myb-like DNA-binding domain 265 315 IPR001005 -
Viun3g02495 404 Gene3D - 260 321 - -
Viun3g02495 404 MobiDBLite consensus disorder prediction 215 265 - -
Viun3g02495 404 Coils Coil 135 155 - -
Viun3g02495 404 MobiDBLite consensus disorder prediction 385 404 - -
Viun3g02495 404 FunFam Myb family transcription factor 262 319 - -
Viun3g02495 404 NCBIfam myb-like DNA-binding domain, SHAQKYF class 263 317 IPR006447 GO:0003677
Viun3g02495 404 MobiDBLite consensus disorder prediction 343 404 - -
Viun3g02495 404 MobiDBLite consensus disorder prediction 203 266 - -
Viun3g02495 404 SUPERFAMILY Homeodomain-like 260 320 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g02495 Viun-Chr3 23884756 23887561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g02495 7 338 G2-like Transcription Factor Family AT2G03500 40.517 1.66e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun3g02495 Myb_DNA-binding 2.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g02495 - - gmx:100812420 627.476